Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3653 and HP15_3654 are separated by 14 nucleotides HP15_3654 and HP15_3655 are separated by 2 nucleotides HP15_3655 and HP15_3656 overlap by 4 nucleotides
HP15_3653: HP15_3653 - acylamide amidohydrolase, at 3,848,032 to 3,849,078
_3653
HP15_3654: HP15_3654 - urea ABC transporter, ATP-binding protein UrtE, at 3,849,093 to 3,849,782
_3654
HP15_3655: HP15_3655 - urea ABC transporter, ATP-binding protein UrtD, at 3,849,785 to 3,850,546
_3655
HP15_3656: HP15_3656 - inner-membrane translocator, at 3,850,543 to 3,851,751
_3656
Position (kb)
3849
3850 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3848.148 kb on + strand, within HP15_3653 at 3848.172 kb on - strand, within HP15_3653 at 3848.186 kb on + strand, within HP15_3653 at 3848.194 kb on - strand, within HP15_3653 at 3848.205 kb on + strand, within HP15_3653 at 3848.212 kb on + strand, within HP15_3653 at 3848.220 kb on - strand, within HP15_3653 at 3848.228 kb on - strand, within HP15_3653 at 3848.228 kb on - strand, within HP15_3653 at 3848.305 kb on + strand, within HP15_3653 at 3848.315 kb on - strand, within HP15_3653 at 3848.331 kb on + strand, within HP15_3653 at 3848.455 kb on + strand, within HP15_3653 at 3848.463 kb on - strand, within HP15_3653 at 3848.501 kb on + strand, within HP15_3653 at 3848.508 kb on - strand, within HP15_3653 at 3848.531 kb on + strand, within HP15_3653 at 3848.608 kb on + strand, within HP15_3653 at 3848.608 kb on - strand, within HP15_3653 at 3848.718 kb on + strand, within HP15_3653 at 3848.786 kb on + strand, within HP15_3653 at 3848.792 kb on - strand, within HP15_3653 at 3848.794 kb on - strand, within HP15_3653 at 3848.913 kb on + strand, within HP15_3653 at 3848.948 kb on + strand, within HP15_3653 at 3848.980 kb on + strand at 3848.980 kb on + strand at 3848.988 kb on - strand at 3848.988 kb on - strand at 3848.988 kb on - strand at 3848.988 kb on - strand at 3849.022 kb on - strand at 3849.072 kb on + strand at 3849.088 kb on - strand at 3849.165 kb on + strand, within HP15_3654 at 3849.207 kb on + strand, within HP15_3654 at 3849.207 kb on + strand, within HP15_3654 at 3849.215 kb on - strand, within HP15_3654 at 3849.215 kb on - strand, within HP15_3654 at 3849.260 kb on + strand, within HP15_3654 at 3849.289 kb on + strand, within HP15_3654 at 3849.291 kb on + strand, within HP15_3654 at 3849.326 kb on + strand, within HP15_3654 at 3849.331 kb on + strand, within HP15_3654 at 3849.331 kb on + strand, within HP15_3654 at 3849.546 kb on + strand, within HP15_3654 at 3849.646 kb on + strand, within HP15_3654 at 3849.661 kb on + strand, within HP15_3654 at 3849.669 kb on - strand, within HP15_3654 at 3849.741 kb on + strand at 3849.798 kb on - strand at 3849.933 kb on + strand, within HP15_3655 at 3849.941 kb on - strand, within HP15_3655 at 3849.945 kb on - strand, within HP15_3655 at 3850.066 kb on + strand, within HP15_3655 at 3850.146 kb on + strand, within HP15_3655 at 3850.146 kb on + strand, within HP15_3655 at 3850.146 kb on + strand, within HP15_3655 at 3850.146 kb on + strand, within HP15_3655 at 3850.154 kb on - strand, within HP15_3655 at 3850.201 kb on + strand, within HP15_3655 at 3850.278 kb on + strand, within HP15_3655 at 3850.291 kb on - strand, within HP15_3655 at 3850.301 kb on - strand, within HP15_3655 at 3850.303 kb on + strand, within HP15_3655 at 3850.316 kb on - strand, within HP15_3655 at 3850.318 kb on + strand, within HP15_3655 at 3850.361 kb on - strand, within HP15_3655 at 3850.361 kb on - strand, within HP15_3655 at 3850.376 kb on + strand, within HP15_3655 at 3850.393 kb on + strand, within HP15_3655 at 3850.634 kb on + strand at 3850.634 kb on + strand at 3850.634 kb on + strand at 3850.648 kb on - strand at 3850.648 kb on - strand at 3850.648 kb on - strand at 3850.699 kb on + strand, within HP15_3656 at 3850.700 kb on + strand, within HP15_3656 at 3850.745 kb on + strand, within HP15_3656
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 3,848,148 + HP15_3653 0.11 +0.6 3,848,172 - HP15_3653 0.13 +0.3 3,848,186 + HP15_3653 0.15 +0.0 3,848,194 - HP15_3653 0.15 +0.1 3,848,205 + HP15_3653 0.17 -0.1 3,848,212 + HP15_3653 0.17 +0.8 3,848,220 - HP15_3653 0.18 -2.8 3,848,228 - HP15_3653 0.19 -2.3 3,848,228 - HP15_3653 0.19 +0.0 3,848,305 + HP15_3653 0.26 +0.0 3,848,315 - HP15_3653 0.27 +0.6 3,848,331 + HP15_3653 0.29 -2.9 3,848,455 + HP15_3653 0.40 -2.5 3,848,463 - HP15_3653 0.41 +2.0 3,848,501 + HP15_3653 0.45 -3.0 3,848,508 - HP15_3653 0.45 -3.3 3,848,531 + HP15_3653 0.48 +0.4 3,848,608 + HP15_3653 0.55 +0.5 3,848,608 - HP15_3653 0.55 -0.5 3,848,718 + HP15_3653 0.66 -1.6 3,848,786 + HP15_3653 0.72 -0.1 3,848,792 - HP15_3653 0.73 +0.0 3,848,794 - HP15_3653 0.73 -0.1 3,848,913 + HP15_3653 0.84 -3.1 3,848,948 + HP15_3653 0.87 +0.6 3,848,980 + +0.8 3,848,980 + +0.6 3,848,988 - +0.7 3,848,988 - -0.3 3,848,988 - -0.1 3,848,988 - -2.8 3,849,022 - +0.9 3,849,072 + +0.3 3,849,088 - -1.5 3,849,165 + HP15_3654 0.10 -2.9 3,849,207 + HP15_3654 0.17 +0.3 3,849,207 + HP15_3654 0.17 +0.1 3,849,215 - HP15_3654 0.18 -0.9 3,849,215 - HP15_3654 0.18 -0.1 3,849,260 + HP15_3654 0.24 -2.9 3,849,289 + HP15_3654 0.28 +0.1 3,849,291 + HP15_3654 0.29 -0.6 3,849,326 + HP15_3654 0.34 -0.8 3,849,331 + HP15_3654 0.34 -0.0 3,849,331 + HP15_3654 0.34 -1.3 3,849,546 + HP15_3654 0.66 -0.7 3,849,646 + HP15_3654 0.80 -0.6 3,849,661 + HP15_3654 0.82 +0.3 3,849,669 - HP15_3654 0.83 +0.4 3,849,741 + +1.1 3,849,798 - -3.0 3,849,933 + HP15_3655 0.19 -0.1 3,849,941 - HP15_3655 0.20 -3.8 3,849,945 - HP15_3655 0.21 +0.5 3,850,066 + HP15_3655 0.37 -2.6 3,850,146 + HP15_3655 0.47 -0.1 3,850,146 + HP15_3655 0.47 -0.7 3,850,146 + HP15_3655 0.47 -0.0 3,850,146 + HP15_3655 0.47 -0.2 3,850,154 - HP15_3655 0.48 +1.5 3,850,201 + HP15_3655 0.55 -3.0 3,850,278 + HP15_3655 0.65 -1.2 3,850,291 - HP15_3655 0.66 -1.2 3,850,301 - HP15_3655 0.68 +0.2 3,850,303 + HP15_3655 0.68 -2.6 3,850,316 - HP15_3655 0.70 +0.5 3,850,318 + HP15_3655 0.70 +0.8 3,850,361 - HP15_3655 0.76 +0.5 3,850,361 - HP15_3655 0.76 -0.8 3,850,376 + HP15_3655 0.78 +0.4 3,850,393 + HP15_3655 0.80 +0.6 3,850,634 + -2.9 3,850,634 + -3.5 3,850,634 + -1.1 3,850,648 - +0.5 3,850,648 - -0.7 3,850,648 - -0.0 3,850,699 + HP15_3656 0.13 +0.7 3,850,700 + HP15_3656 0.13 -0.3 3,850,745 + HP15_3656 0.17 -3.3
Or see this region's nucleotide sequence