Strain Fitness in Marinobacter adhaerens HP15 around HP15_3654

Experiment: Control growth in Pro99_seawater

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3653 and HP15_3654 are separated by 14 nucleotidesHP15_3654 and HP15_3655 are separated by 2 nucleotidesHP15_3655 and HP15_3656 overlap by 4 nucleotides HP15_3653: HP15_3653 - acylamide amidohydrolase, at 3,848,032 to 3,849,078 _3653 HP15_3654: HP15_3654 - urea ABC transporter, ATP-binding protein UrtE, at 3,849,093 to 3,849,782 _3654 HP15_3655: HP15_3655 - urea ABC transporter, ATP-binding protein UrtD, at 3,849,785 to 3,850,546 _3655 HP15_3656: HP15_3656 - inner-membrane translocator, at 3,850,543 to 3,851,751 _3656 Position (kb) 3849 3850Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3848.148 kb on + strand, within HP15_3653at 3848.172 kb on - strand, within HP15_3653at 3848.186 kb on + strand, within HP15_3653at 3848.194 kb on - strand, within HP15_3653at 3848.205 kb on + strand, within HP15_3653at 3848.212 kb on + strand, within HP15_3653at 3848.220 kb on - strand, within HP15_3653at 3848.228 kb on - strand, within HP15_3653at 3848.228 kb on - strand, within HP15_3653at 3848.305 kb on + strand, within HP15_3653at 3848.315 kb on - strand, within HP15_3653at 3848.331 kb on + strand, within HP15_3653at 3848.455 kb on + strand, within HP15_3653at 3848.463 kb on - strand, within HP15_3653at 3848.501 kb on + strand, within HP15_3653at 3848.508 kb on - strand, within HP15_3653at 3848.531 kb on + strand, within HP15_3653at 3848.608 kb on + strand, within HP15_3653at 3848.608 kb on - strand, within HP15_3653at 3848.718 kb on + strand, within HP15_3653at 3848.786 kb on + strand, within HP15_3653at 3848.792 kb on - strand, within HP15_3653at 3848.794 kb on - strand, within HP15_3653at 3848.913 kb on + strand, within HP15_3653at 3848.948 kb on + strand, within HP15_3653at 3848.980 kb on + strandat 3848.980 kb on + strandat 3848.988 kb on - strandat 3848.988 kb on - strandat 3848.988 kb on - strandat 3848.988 kb on - strandat 3849.022 kb on - strandat 3849.072 kb on + strandat 3849.088 kb on - strandat 3849.165 kb on + strand, within HP15_3654at 3849.207 kb on + strand, within HP15_3654at 3849.207 kb on + strand, within HP15_3654at 3849.215 kb on - strand, within HP15_3654at 3849.215 kb on - strand, within HP15_3654at 3849.260 kb on + strand, within HP15_3654at 3849.289 kb on + strand, within HP15_3654at 3849.291 kb on + strand, within HP15_3654at 3849.326 kb on + strand, within HP15_3654at 3849.331 kb on + strand, within HP15_3654at 3849.331 kb on + strand, within HP15_3654at 3849.546 kb on + strand, within HP15_3654at 3849.646 kb on + strand, within HP15_3654at 3849.661 kb on + strand, within HP15_3654at 3849.669 kb on - strand, within HP15_3654at 3849.741 kb on + strandat 3849.798 kb on - strandat 3849.933 kb on + strand, within HP15_3655at 3849.941 kb on - strand, within HP15_3655at 3849.945 kb on - strand, within HP15_3655at 3850.066 kb on + strand, within HP15_3655at 3850.146 kb on + strand, within HP15_3655at 3850.146 kb on + strand, within HP15_3655at 3850.146 kb on + strand, within HP15_3655at 3850.146 kb on + strand, within HP15_3655at 3850.154 kb on - strand, within HP15_3655at 3850.201 kb on + strand, within HP15_3655at 3850.278 kb on + strand, within HP15_3655at 3850.291 kb on - strand, within HP15_3655at 3850.301 kb on - strand, within HP15_3655at 3850.303 kb on + strand, within HP15_3655at 3850.316 kb on - strand, within HP15_3655at 3850.318 kb on + strand, within HP15_3655at 3850.361 kb on - strand, within HP15_3655at 3850.361 kb on - strand, within HP15_3655at 3850.376 kb on + strand, within HP15_3655at 3850.393 kb on + strand, within HP15_3655at 3850.634 kb on + strandat 3850.634 kb on + strandat 3850.634 kb on + strandat 3850.648 kb on - strandat 3850.648 kb on - strandat 3850.648 kb on - strandat 3850.699 kb on + strand, within HP15_3656at 3850.700 kb on + strand, within HP15_3656at 3850.745 kb on + strand, within HP15_3656

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Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
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3,848,148 + HP15_3653 0.11 +0.6
3,848,172 - HP15_3653 0.13 +0.3
3,848,186 + HP15_3653 0.15 +0.0
3,848,194 - HP15_3653 0.15 +0.1
3,848,205 + HP15_3653 0.17 -0.1
3,848,212 + HP15_3653 0.17 +0.8
3,848,220 - HP15_3653 0.18 -2.8
3,848,228 - HP15_3653 0.19 -2.3
3,848,228 - HP15_3653 0.19 +0.0
3,848,305 + HP15_3653 0.26 +0.0
3,848,315 - HP15_3653 0.27 +0.6
3,848,331 + HP15_3653 0.29 -2.9
3,848,455 + HP15_3653 0.40 -2.5
3,848,463 - HP15_3653 0.41 +2.0
3,848,501 + HP15_3653 0.45 -3.0
3,848,508 - HP15_3653 0.45 -3.3
3,848,531 + HP15_3653 0.48 +0.4
3,848,608 + HP15_3653 0.55 +0.5
3,848,608 - HP15_3653 0.55 -0.5
3,848,718 + HP15_3653 0.66 -1.6
3,848,786 + HP15_3653 0.72 -0.1
3,848,792 - HP15_3653 0.73 +0.0
3,848,794 - HP15_3653 0.73 -0.1
3,848,913 + HP15_3653 0.84 -3.1
3,848,948 + HP15_3653 0.87 +0.6
3,848,980 + +0.8
3,848,980 + +0.6
3,848,988 - +0.7
3,848,988 - -0.3
3,848,988 - -0.1
3,848,988 - -2.8
3,849,022 - +0.9
3,849,072 + +0.3
3,849,088 - -1.5
3,849,165 + HP15_3654 0.10 -2.9
3,849,207 + HP15_3654 0.17 +0.3
3,849,207 + HP15_3654 0.17 +0.1
3,849,215 - HP15_3654 0.18 -0.9
3,849,215 - HP15_3654 0.18 -0.1
3,849,260 + HP15_3654 0.24 -2.9
3,849,289 + HP15_3654 0.28 +0.1
3,849,291 + HP15_3654 0.29 -0.6
3,849,326 + HP15_3654 0.34 -0.8
3,849,331 + HP15_3654 0.34 -0.0
3,849,331 + HP15_3654 0.34 -1.3
3,849,546 + HP15_3654 0.66 -0.7
3,849,646 + HP15_3654 0.80 -0.6
3,849,661 + HP15_3654 0.82 +0.3
3,849,669 - HP15_3654 0.83 +0.4
3,849,741 + +1.1
3,849,798 - -3.0
3,849,933 + HP15_3655 0.19 -0.1
3,849,941 - HP15_3655 0.20 -3.8
3,849,945 - HP15_3655 0.21 +0.5
3,850,066 + HP15_3655 0.37 -2.6
3,850,146 + HP15_3655 0.47 -0.1
3,850,146 + HP15_3655 0.47 -0.7
3,850,146 + HP15_3655 0.47 -0.0
3,850,146 + HP15_3655 0.47 -0.2
3,850,154 - HP15_3655 0.48 +1.5
3,850,201 + HP15_3655 0.55 -3.0
3,850,278 + HP15_3655 0.65 -1.2
3,850,291 - HP15_3655 0.66 -1.2
3,850,301 - HP15_3655 0.68 +0.2
3,850,303 + HP15_3655 0.68 -2.6
3,850,316 - HP15_3655 0.70 +0.5
3,850,318 + HP15_3655 0.70 +0.8
3,850,361 - HP15_3655 0.76 +0.5
3,850,361 - HP15_3655 0.76 -0.8
3,850,376 + HP15_3655 0.78 +0.4
3,850,393 + HP15_3655 0.80 +0.6
3,850,634 + -2.9
3,850,634 + -3.5
3,850,634 + -1.1
3,850,648 - +0.5
3,850,648 - -0.7
3,850,648 - -0.0
3,850,699 + HP15_3656 0.13 +0.7
3,850,700 + HP15_3656 0.13 -0.3
3,850,745 + HP15_3656 0.17 -3.3

Or see this region's nucleotide sequence