Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3651 and HP15_3652 are separated by 101 nucleotides HP15_3652 and HP15_3653 are separated by 15 nucleotides
HP15_3651: HP15_3651 - acetamidase/formamidase, at 3,845,639 to 3,846,871
_3651
HP15_3652: HP15_3652 - ATPase AAA-2 domain protein, at 3,846,973 to 3,848,016
_3652
HP15_3653: HP15_3653 - acylamide amidohydrolase, at 3,848,032 to 3,849,078
_3653
Position (kb)
3846
3847
3848
3849 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3845.988 kb on + strand, within HP15_3651 at 3846.141 kb on + strand, within HP15_3651 at 3846.144 kb on - strand, within HP15_3651 at 3846.144 kb on - strand, within HP15_3651 at 3846.144 kb on - strand, within HP15_3651 at 3846.177 kb on - strand, within HP15_3651 at 3846.283 kb on - strand, within HP15_3651 at 3846.300 kb on + strand, within HP15_3651 at 3846.300 kb on + strand, within HP15_3651 at 3846.350 kb on - strand, within HP15_3651 at 3846.375 kb on - strand, within HP15_3651 at 3846.407 kb on + strand, within HP15_3651 at 3846.521 kb on - strand, within HP15_3651 at 3846.614 kb on - strand, within HP15_3651 at 3846.625 kb on + strand, within HP15_3651 at 3846.659 kb on + strand, within HP15_3651 at 3846.679 kb on - strand, within HP15_3651 at 3846.774 kb on - strand at 3846.834 kb on + strand at 3846.839 kb on + strand at 3846.852 kb on - strand at 3846.890 kb on - strand at 3846.936 kb on + strand at 3846.936 kb on + strand at 3847.014 kb on - strand at 3847.048 kb on - strand at 3847.160 kb on - strand, within HP15_3652 at 3847.322 kb on - strand, within HP15_3652 at 3847.371 kb on + strand, within HP15_3652 at 3847.389 kb on + strand, within HP15_3652 at 3847.397 kb on - strand, within HP15_3652 at 3847.443 kb on - strand, within HP15_3652 at 3847.443 kb on - strand, within HP15_3652 at 3847.480 kb on + strand, within HP15_3652 at 3847.510 kb on - strand, within HP15_3652 at 3847.512 kb on - strand, within HP15_3652 at 3847.562 kb on + strand, within HP15_3652 at 3847.582 kb on + strand, within HP15_3652 at 3847.590 kb on - strand, within HP15_3652 at 3847.590 kb on - strand, within HP15_3652 at 3847.592 kb on - strand, within HP15_3652 at 3847.594 kb on + strand, within HP15_3652 at 3847.616 kb on - strand, within HP15_3652 at 3847.636 kb on + strand, within HP15_3652 at 3847.659 kb on - strand, within HP15_3652 at 3847.659 kb on - strand, within HP15_3652 at 3847.659 kb on - strand, within HP15_3652 at 3847.659 kb on - strand, within HP15_3652 at 3847.659 kb on - strand, within HP15_3652 at 3847.659 kb on - strand, within HP15_3652 at 3847.664 kb on - strand, within HP15_3652 at 3847.674 kb on - strand, within HP15_3652 at 3847.778 kb on + strand, within HP15_3652 at 3847.834 kb on - strand, within HP15_3652 at 3847.877 kb on - strand, within HP15_3652 at 3847.942 kb on + strand at 3847.955 kb on - strand at 3848.022 kb on + strand at 3848.045 kb on + strand at 3848.148 kb on + strand, within HP15_3653 at 3848.172 kb on - strand, within HP15_3653 at 3848.186 kb on + strand, within HP15_3653 at 3848.194 kb on - strand, within HP15_3653 at 3848.205 kb on + strand, within HP15_3653 at 3848.212 kb on + strand, within HP15_3653 at 3848.220 kb on - strand, within HP15_3653 at 3848.228 kb on - strand, within HP15_3653 at 3848.228 kb on - strand, within HP15_3653 at 3848.305 kb on + strand, within HP15_3653 at 3848.315 kb on - strand, within HP15_3653 at 3848.331 kb on + strand, within HP15_3653 at 3848.455 kb on + strand, within HP15_3653 at 3848.463 kb on - strand, within HP15_3653 at 3848.501 kb on + strand, within HP15_3653 at 3848.508 kb on - strand, within HP15_3653 at 3848.531 kb on + strand, within HP15_3653 at 3848.608 kb on + strand, within HP15_3653 at 3848.608 kb on - strand, within HP15_3653 at 3848.718 kb on + strand, within HP15_3653 at 3848.786 kb on + strand, within HP15_3653 at 3848.792 kb on - strand, within HP15_3653 at 3848.794 kb on - strand, within HP15_3653 at 3848.913 kb on + strand, within HP15_3653 at 3848.948 kb on + strand, within HP15_3653 at 3848.980 kb on + strand at 3848.980 kb on + strand at 3848.988 kb on - strand at 3848.988 kb on - strand at 3848.988 kb on - strand at 3848.988 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 3,845,988 + HP15_3651 0.28 -0.3 3,846,141 + HP15_3651 0.41 -0.4 3,846,144 - HP15_3651 0.41 +0.2 3,846,144 - HP15_3651 0.41 -0.3 3,846,144 - HP15_3651 0.41 -0.0 3,846,177 - HP15_3651 0.44 -1.8 3,846,283 - HP15_3651 0.52 -2.3 3,846,300 + HP15_3651 0.54 +0.5 3,846,300 + HP15_3651 0.54 +0.5 3,846,350 - HP15_3651 0.58 +0.2 3,846,375 - HP15_3651 0.60 -2.5 3,846,407 + HP15_3651 0.62 +0.8 3,846,521 - HP15_3651 0.72 +0.4 3,846,614 - HP15_3651 0.79 -3.0 3,846,625 + HP15_3651 0.80 -0.2 3,846,659 + HP15_3651 0.83 -0.3 3,846,679 - HP15_3651 0.84 +0.9 3,846,774 - -0.0 3,846,834 + +1.5 3,846,839 + -2.9 3,846,852 - +0.8 3,846,890 - +0.1 3,846,936 + -0.9 3,846,936 + -3.1 3,847,014 - +0.7 3,847,048 - -1.4 3,847,160 - HP15_3652 0.18 +0.5 3,847,322 - HP15_3652 0.33 +1.1 3,847,371 + HP15_3652 0.38 +0.1 3,847,389 + HP15_3652 0.40 +1.2 3,847,397 - HP15_3652 0.41 -1.9 3,847,443 - HP15_3652 0.45 -3.5 3,847,443 - HP15_3652 0.45 -3.2 3,847,480 + HP15_3652 0.49 -3.9 3,847,510 - HP15_3652 0.51 -0.0 3,847,512 - HP15_3652 0.52 -1.9 3,847,562 + HP15_3652 0.56 +0.6 3,847,582 + HP15_3652 0.58 +0.6 3,847,590 - HP15_3652 0.59 +0.2 3,847,590 - HP15_3652 0.59 +0.1 3,847,592 - HP15_3652 0.59 +0.7 3,847,594 + HP15_3652 0.59 +0.6 3,847,616 - HP15_3652 0.62 -0.1 3,847,636 + HP15_3652 0.64 -1.2 3,847,659 - HP15_3652 0.66 -0.1 3,847,659 - HP15_3652 0.66 -0.3 3,847,659 - HP15_3652 0.66 +0.6 3,847,659 - HP15_3652 0.66 -2.0 3,847,659 - HP15_3652 0.66 -1.0 3,847,659 - HP15_3652 0.66 +0.4 3,847,664 - HP15_3652 0.66 +0.3 3,847,674 - HP15_3652 0.67 -0.2 3,847,778 + HP15_3652 0.77 -0.8 3,847,834 - HP15_3652 0.82 -0.0 3,847,877 - HP15_3652 0.87 -4.6 3,847,942 + +0.2 3,847,955 - +0.3 3,848,022 + +0.2 3,848,045 + -0.2 3,848,148 + HP15_3653 0.11 +0.6 3,848,172 - HP15_3653 0.13 +0.3 3,848,186 + HP15_3653 0.15 +0.0 3,848,194 - HP15_3653 0.15 +0.1 3,848,205 + HP15_3653 0.17 -0.1 3,848,212 + HP15_3653 0.17 +0.8 3,848,220 - HP15_3653 0.18 -2.8 3,848,228 - HP15_3653 0.19 -2.3 3,848,228 - HP15_3653 0.19 +0.0 3,848,305 + HP15_3653 0.26 +0.0 3,848,315 - HP15_3653 0.27 +0.6 3,848,331 + HP15_3653 0.29 -2.9 3,848,455 + HP15_3653 0.40 -2.5 3,848,463 - HP15_3653 0.41 +2.0 3,848,501 + HP15_3653 0.45 -3.0 3,848,508 - HP15_3653 0.45 -3.3 3,848,531 + HP15_3653 0.48 +0.4 3,848,608 + HP15_3653 0.55 +0.5 3,848,608 - HP15_3653 0.55 -0.5 3,848,718 + HP15_3653 0.66 -1.6 3,848,786 + HP15_3653 0.72 -0.1 3,848,792 - HP15_3653 0.73 +0.0 3,848,794 - HP15_3653 0.73 -0.1 3,848,913 + HP15_3653 0.84 -3.1 3,848,948 + HP15_3653 0.87 +0.6 3,848,980 + +0.8 3,848,980 + +0.6 3,848,988 - +0.7 3,848,988 - -0.3 3,848,988 - -0.1 3,848,988 - -2.8
Or see this region's nucleotide sequence