Strain Fitness in Marinobacter adhaerens HP15 around HP15_3454

Experiment: Control growth in Pro99_seawater

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3453 and HP15_3454 are separated by 39 nucleotidesHP15_3454 and HP15_3455 are separated by 161 nucleotides HP15_3453: HP15_3453 - cysteine synthase A, at 3,634,346 to 3,635,317 _3453 HP15_3454: HP15_3454 - OmpA domain protein transmembrane region-containing protein, at 3,635,357 to 3,635,935 _3454 HP15_3455: HP15_3455 - glycerophosphoryl diester phosphodiesterase family protein, at 3,636,097 to 3,637,371 _3455 Position (kb) 3635 3636Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3634.371 kb on - strandat 3634.493 kb on - strand, within HP15_3453at 3634.529 kb on - strand, within HP15_3453at 3634.540 kb on - strand, within HP15_3453at 3634.574 kb on + strand, within HP15_3453at 3634.582 kb on - strand, within HP15_3453at 3634.612 kb on + strand, within HP15_3453at 3634.655 kb on + strand, within HP15_3453at 3634.663 kb on - strand, within HP15_3453at 3635.031 kb on - strand, within HP15_3453at 3635.044 kb on - strand, within HP15_3453at 3635.073 kb on + strand, within HP15_3453at 3635.083 kb on + strand, within HP15_3453at 3635.145 kb on - strand, within HP15_3453at 3635.221 kb on + strandat 3635.345 kb on + strandat 3635.345 kb on + strandat 3635.353 kb on - strandat 3635.355 kb on + strandat 3635.530 kb on - strand, within HP15_3454at 3635.632 kb on + strand, within HP15_3454at 3635.655 kb on - strand, within HP15_3454at 3635.655 kb on - strand, within HP15_3454at 3635.833 kb on - strand, within HP15_3454at 3635.855 kb on + strand, within HP15_3454at 3635.863 kb on - strand, within HP15_3454at 3635.863 kb on - strand, within HP15_3454at 3635.863 kb on - strand, within HP15_3454at 3635.868 kb on - strand, within HP15_3454at 3635.900 kb on - strandat 3635.900 kb on - strandat 3635.910 kb on - strandat 3635.953 kb on - strandat 3636.012 kb on - strandat 3636.015 kb on - strandat 3636.051 kb on + strandat 3636.210 kb on + strandat 3636.251 kb on + strand, within HP15_3455at 3636.297 kb on + strand, within HP15_3455at 3636.374 kb on - strand, within HP15_3455at 3636.376 kb on + strand, within HP15_3455at 3636.383 kb on + strand, within HP15_3455at 3636.448 kb on - strand, within HP15_3455at 3636.448 kb on - strand, within HP15_3455at 3636.448 kb on - strand, within HP15_3455at 3636.449 kb on - strand, within HP15_3455at 3636.469 kb on + strand, within HP15_3455at 3636.481 kb on - strand, within HP15_3455at 3636.482 kb on - strand, within HP15_3455at 3636.483 kb on + strand, within HP15_3455at 3636.527 kb on + strand, within HP15_3455at 3636.535 kb on - strand, within HP15_3455at 3636.557 kb on - strand, within HP15_3455at 3636.557 kb on - strand, within HP15_3455at 3636.571 kb on - strand, within HP15_3455at 3636.579 kb on + strand, within HP15_3455at 3636.638 kb on - strand, within HP15_3455at 3636.704 kb on + strand, within HP15_3455at 3636.704 kb on + strand, within HP15_3455at 3636.722 kb on - strand, within HP15_3455at 3636.755 kb on + strand, within HP15_3455at 3636.763 kb on - strand, within HP15_3455at 3636.774 kb on + strand, within HP15_3455at 3636.782 kb on - strand, within HP15_3455at 3636.813 kb on + strand, within HP15_3455at 3636.821 kb on - strand, within HP15_3455

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Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
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3,634,371 - +0.9
3,634,493 - HP15_3453 0.15 +0.8
3,634,529 - HP15_3453 0.19 -1.5
3,634,540 - HP15_3453 0.20 -0.1
3,634,574 + HP15_3453 0.23 +0.5
3,634,582 - HP15_3453 0.24 -3.0
3,634,612 + HP15_3453 0.27 +0.7
3,634,655 + HP15_3453 0.32 -3.8
3,634,663 - HP15_3453 0.33 -2.6
3,635,031 - HP15_3453 0.70 +0.0
3,635,044 - HP15_3453 0.72 -3.2
3,635,073 + HP15_3453 0.75 -0.0
3,635,083 + HP15_3453 0.76 -0.3
3,635,145 - HP15_3453 0.82 -3.3
3,635,221 + -0.0
3,635,345 + +0.0
3,635,345 + -2.1
3,635,353 - +1.2
3,635,355 + -1.0
3,635,530 - HP15_3454 0.30 -1.3
3,635,632 + HP15_3454 0.47 -4.0
3,635,655 - HP15_3454 0.51 -2.1
3,635,655 - HP15_3454 0.51 -0.8
3,635,833 - HP15_3454 0.82 +0.2
3,635,855 + HP15_3454 0.86 -1.1
3,635,863 - HP15_3454 0.87 +0.5
3,635,863 - HP15_3454 0.87 -4.1
3,635,863 - HP15_3454 0.87 -1.4
3,635,868 - HP15_3454 0.88 +0.3
3,635,900 - -1.5
3,635,900 - +1.8
3,635,910 - +0.8
3,635,953 - -0.2
3,636,012 - +0.9
3,636,015 - +0.4
3,636,051 + -1.0
3,636,210 + -0.8
3,636,251 + HP15_3455 0.12 -0.0
3,636,297 + HP15_3455 0.16 +0.4
3,636,374 - HP15_3455 0.22 -2.2
3,636,376 + HP15_3455 0.22 -0.9
3,636,383 + HP15_3455 0.22 +0.8
3,636,448 - HP15_3455 0.28 +0.3
3,636,448 - HP15_3455 0.28 -0.2
3,636,448 - HP15_3455 0.28 -2.1
3,636,449 - HP15_3455 0.28 -0.6
3,636,469 + HP15_3455 0.29 +0.6
3,636,481 - HP15_3455 0.30 -0.1
3,636,482 - HP15_3455 0.30 -3.4
3,636,483 + HP15_3455 0.30 +0.3
3,636,527 + HP15_3455 0.34 -2.1
3,636,535 - HP15_3455 0.34 -3.8
3,636,557 - HP15_3455 0.36 +0.0
3,636,557 - HP15_3455 0.36 -1.6
3,636,571 - HP15_3455 0.37 -0.3
3,636,579 + HP15_3455 0.38 -3.3
3,636,638 - HP15_3455 0.42 +0.4
3,636,704 + HP15_3455 0.48 +0.1
3,636,704 + HP15_3455 0.48 +0.5
3,636,722 - HP15_3455 0.49 -2.4
3,636,755 + HP15_3455 0.52 -0.4
3,636,763 - HP15_3455 0.52 +0.7
3,636,774 + HP15_3455 0.53 +0.9
3,636,782 - HP15_3455 0.54 +0.0
3,636,813 + HP15_3455 0.56 -2.5
3,636,821 - HP15_3455 0.57 -0.0

Or see this region's nucleotide sequence