Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3453 and HP15_3454 are separated by 39 nucleotides HP15_3454 and HP15_3455 are separated by 161 nucleotides
HP15_3453: HP15_3453 - cysteine synthase A, at 3,634,346 to 3,635,317
_3453
HP15_3454: HP15_3454 - OmpA domain protein transmembrane region-containing protein, at 3,635,357 to 3,635,935
_3454
HP15_3455: HP15_3455 - glycerophosphoryl diester phosphodiesterase family protein, at 3,636,097 to 3,637,371
_3455
Position (kb)
3635
3636 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3634.371 kb on - strand at 3634.493 kb on - strand, within HP15_3453 at 3634.529 kb on - strand, within HP15_3453 at 3634.540 kb on - strand, within HP15_3453 at 3634.574 kb on + strand, within HP15_3453 at 3634.582 kb on - strand, within HP15_3453 at 3634.612 kb on + strand, within HP15_3453 at 3634.655 kb on + strand, within HP15_3453 at 3634.663 kb on - strand, within HP15_3453 at 3635.031 kb on - strand, within HP15_3453 at 3635.044 kb on - strand, within HP15_3453 at 3635.073 kb on + strand, within HP15_3453 at 3635.083 kb on + strand, within HP15_3453 at 3635.145 kb on - strand, within HP15_3453 at 3635.221 kb on + strand at 3635.345 kb on + strand at 3635.345 kb on + strand at 3635.353 kb on - strand at 3635.355 kb on + strand at 3635.530 kb on - strand, within HP15_3454 at 3635.632 kb on + strand, within HP15_3454 at 3635.655 kb on - strand, within HP15_3454 at 3635.655 kb on - strand, within HP15_3454 at 3635.833 kb on - strand, within HP15_3454 at 3635.855 kb on + strand, within HP15_3454 at 3635.863 kb on - strand, within HP15_3454 at 3635.863 kb on - strand, within HP15_3454 at 3635.863 kb on - strand, within HP15_3454 at 3635.868 kb on - strand, within HP15_3454 at 3635.900 kb on - strand at 3635.900 kb on - strand at 3635.910 kb on - strand at 3635.953 kb on - strand at 3636.012 kb on - strand at 3636.015 kb on - strand at 3636.051 kb on + strand at 3636.210 kb on + strand at 3636.251 kb on + strand, within HP15_3455 at 3636.297 kb on + strand, within HP15_3455 at 3636.374 kb on - strand, within HP15_3455 at 3636.376 kb on + strand, within HP15_3455 at 3636.383 kb on + strand, within HP15_3455 at 3636.448 kb on - strand, within HP15_3455 at 3636.448 kb on - strand, within HP15_3455 at 3636.448 kb on - strand, within HP15_3455 at 3636.449 kb on - strand, within HP15_3455 at 3636.469 kb on + strand, within HP15_3455 at 3636.481 kb on - strand, within HP15_3455 at 3636.482 kb on - strand, within HP15_3455 at 3636.483 kb on + strand, within HP15_3455 at 3636.527 kb on + strand, within HP15_3455 at 3636.535 kb on - strand, within HP15_3455 at 3636.557 kb on - strand, within HP15_3455 at 3636.557 kb on - strand, within HP15_3455 at 3636.571 kb on - strand, within HP15_3455 at 3636.579 kb on + strand, within HP15_3455 at 3636.638 kb on - strand, within HP15_3455 at 3636.704 kb on + strand, within HP15_3455 at 3636.704 kb on + strand, within HP15_3455 at 3636.722 kb on - strand, within HP15_3455 at 3636.755 kb on + strand, within HP15_3455 at 3636.763 kb on - strand, within HP15_3455 at 3636.774 kb on + strand, within HP15_3455 at 3636.782 kb on - strand, within HP15_3455 at 3636.813 kb on + strand, within HP15_3455 at 3636.821 kb on - strand, within HP15_3455
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 3,634,371 - +0.9 3,634,493 - HP15_3453 0.15 +0.8 3,634,529 - HP15_3453 0.19 -1.5 3,634,540 - HP15_3453 0.20 -0.1 3,634,574 + HP15_3453 0.23 +0.5 3,634,582 - HP15_3453 0.24 -3.0 3,634,612 + HP15_3453 0.27 +0.7 3,634,655 + HP15_3453 0.32 -3.8 3,634,663 - HP15_3453 0.33 -2.6 3,635,031 - HP15_3453 0.70 +0.0 3,635,044 - HP15_3453 0.72 -3.2 3,635,073 + HP15_3453 0.75 -0.0 3,635,083 + HP15_3453 0.76 -0.3 3,635,145 - HP15_3453 0.82 -3.3 3,635,221 + -0.0 3,635,345 + +0.0 3,635,345 + -2.1 3,635,353 - +1.2 3,635,355 + -1.0 3,635,530 - HP15_3454 0.30 -1.3 3,635,632 + HP15_3454 0.47 -4.0 3,635,655 - HP15_3454 0.51 -2.1 3,635,655 - HP15_3454 0.51 -0.8 3,635,833 - HP15_3454 0.82 +0.2 3,635,855 + HP15_3454 0.86 -1.1 3,635,863 - HP15_3454 0.87 +0.5 3,635,863 - HP15_3454 0.87 -4.1 3,635,863 - HP15_3454 0.87 -1.4 3,635,868 - HP15_3454 0.88 +0.3 3,635,900 - -1.5 3,635,900 - +1.8 3,635,910 - +0.8 3,635,953 - -0.2 3,636,012 - +0.9 3,636,015 - +0.4 3,636,051 + -1.0 3,636,210 + -0.8 3,636,251 + HP15_3455 0.12 -0.0 3,636,297 + HP15_3455 0.16 +0.4 3,636,374 - HP15_3455 0.22 -2.2 3,636,376 + HP15_3455 0.22 -0.9 3,636,383 + HP15_3455 0.22 +0.8 3,636,448 - HP15_3455 0.28 +0.3 3,636,448 - HP15_3455 0.28 -0.2 3,636,448 - HP15_3455 0.28 -2.1 3,636,449 - HP15_3455 0.28 -0.6 3,636,469 + HP15_3455 0.29 +0.6 3,636,481 - HP15_3455 0.30 -0.1 3,636,482 - HP15_3455 0.30 -3.4 3,636,483 + HP15_3455 0.30 +0.3 3,636,527 + HP15_3455 0.34 -2.1 3,636,535 - HP15_3455 0.34 -3.8 3,636,557 - HP15_3455 0.36 +0.0 3,636,557 - HP15_3455 0.36 -1.6 3,636,571 - HP15_3455 0.37 -0.3 3,636,579 + HP15_3455 0.38 -3.3 3,636,638 - HP15_3455 0.42 +0.4 3,636,704 + HP15_3455 0.48 +0.1 3,636,704 + HP15_3455 0.48 +0.5 3,636,722 - HP15_3455 0.49 -2.4 3,636,755 + HP15_3455 0.52 -0.4 3,636,763 - HP15_3455 0.52 +0.7 3,636,774 + HP15_3455 0.53 +0.9 3,636,782 - HP15_3455 0.54 +0.0 3,636,813 + HP15_3455 0.56 -2.5 3,636,821 - HP15_3455 0.57 -0.0
Or see this region's nucleotide sequence