Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3435 and HP15_3437 overlap by 4 nucleotides HP15_3437 and HP15_3436 are separated by 11 nucleotides HP15_3436 and HP15_3438 are separated by 110 nucleotides
HP15_3435: HP15_3435 - methyl-accepting chemotaxis protein, at 3,613,444 to 3,614,964
_3435
HP15_3437: HP15_3437 - electron transport SCO1/SenC-like protein, at 3,614,961 to 3,615,482
_3437
HP15_3436: HP15_3436 - hypothetical protein, at 3,615,494 to 3,615,607
_3436
HP15_3438: HP15_3438 - lipid A export ATP-binding/permease protein msbA, at 3,615,718 to 3,617,541
_3438
Position (kb)
3614
3615
3616 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3614.063 kb on + strand, within HP15_3435 at 3614.177 kb on + strand, within HP15_3435 at 3614.296 kb on + strand, within HP15_3435 at 3614.337 kb on + strand, within HP15_3435 at 3614.416 kb on + strand, within HP15_3435 at 3614.416 kb on + strand, within HP15_3435 at 3614.464 kb on + strand, within HP15_3435 at 3614.724 kb on + strand, within HP15_3435 at 3614.727 kb on - strand, within HP15_3435 at 3614.813 kb on + strand at 3614.941 kb on - strand at 3615.051 kb on - strand, within HP15_3437 at 3615.089 kb on - strand, within HP15_3437 at 3615.094 kb on - strand, within HP15_3437 at 3615.118 kb on + strand, within HP15_3437 at 3615.126 kb on - strand, within HP15_3437 at 3615.260 kb on + strand, within HP15_3437 at 3615.509 kb on - strand, within HP15_3436 at 3615.623 kb on - strand at 3615.734 kb on + strand at 3615.742 kb on - strand at 3615.761 kb on - strand at 3615.870 kb on - strand at 3615.870 kb on - strand at 3615.960 kb on + strand, within HP15_3438 at 3616.009 kb on + strand, within HP15_3438 at 3616.219 kb on + strand, within HP15_3438 at 3616.252 kb on + strand, within HP15_3438 at 3616.260 kb on - strand, within HP15_3438 at 3616.260 kb on - strand, within HP15_3438 at 3616.285 kb on - strand, within HP15_3438 at 3616.295 kb on + strand, within HP15_3438 at 3616.422 kb on + strand, within HP15_3438 at 3616.422 kb on + strand, within HP15_3438 at 3616.422 kb on + strand, within HP15_3438 at 3616.422 kb on + strand, within HP15_3438 at 3616.422 kb on + strand, within HP15_3438 at 3616.422 kb on + strand, within HP15_3438 at 3616.422 kb on + strand, within HP15_3438 at 3616.430 kb on - strand, within HP15_3438 at 3616.430 kb on - strand, within HP15_3438 at 3616.430 kb on - strand, within HP15_3438 at 3616.430 kb on - strand, within HP15_3438 at 3616.430 kb on - strand, within HP15_3438
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 3,614,063 + HP15_3435 0.41 +0.0 3,614,177 + HP15_3435 0.48 -0.8 3,614,296 + HP15_3435 0.56 -0.2 3,614,337 + HP15_3435 0.59 -1.8 3,614,416 + HP15_3435 0.64 +0.5 3,614,416 + HP15_3435 0.64 +0.6 3,614,464 + HP15_3435 0.67 -0.2 3,614,724 + HP15_3435 0.84 -3.3 3,614,727 - HP15_3435 0.84 +0.2 3,614,813 + +1.5 3,614,941 - -2.9 3,615,051 - HP15_3437 0.17 +0.4 3,615,089 - HP15_3437 0.25 -0.2 3,615,094 - HP15_3437 0.25 -0.4 3,615,118 + HP15_3437 0.30 -0.5 3,615,126 - HP15_3437 0.32 +0.5 3,615,260 + HP15_3437 0.57 -0.4 3,615,509 - HP15_3436 0.13 -3.3 3,615,623 - +0.1 3,615,734 + -2.1 3,615,742 - +0.3 3,615,761 - +0.6 3,615,870 - -0.3 3,615,870 - -3.8 3,615,960 + HP15_3438 0.13 -2.1 3,616,009 + HP15_3438 0.16 -0.1 3,616,219 + HP15_3438 0.27 +0.9 3,616,252 + HP15_3438 0.29 +0.0 3,616,260 - HP15_3438 0.30 +0.5 3,616,260 - HP15_3438 0.30 +1.4 3,616,285 - HP15_3438 0.31 +0.8 3,616,295 + HP15_3438 0.32 +1.7 3,616,422 + HP15_3438 0.39 +0.6 3,616,422 + HP15_3438 0.39 +0.4 3,616,422 + HP15_3438 0.39 +1.1 3,616,422 + HP15_3438 0.39 -0.2 3,616,422 + HP15_3438 0.39 -0.9 3,616,422 + HP15_3438 0.39 +0.0 3,616,422 + HP15_3438 0.39 -0.0 3,616,430 - HP15_3438 0.39 +0.4 3,616,430 - HP15_3438 0.39 -1.7 3,616,430 - HP15_3438 0.39 +0.1 3,616,430 - HP15_3438 0.39 +0.2 3,616,430 - HP15_3438 0.39 +0.5
Or see this region's nucleotide sequence