Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3302 and HP15_3303 are separated by 70 nucleotides HP15_3303 and HP15_3304 overlap by 17 nucleotides HP15_3304 and HP15_3305 overlap by 1 nucleotides
HP15_3302: HP15_3302 - sterol desaturase family protein, at 3,459,932 to 3,460,918
_3302
HP15_3303: HP15_3303 - lysophospholipase, at 3,460,989 to 3,461,846
_3303
HP15_3304: HP15_3304 - molybdenum ABC transporter, periplasmic binding protein, at 3,461,830 to 3,462,633
_3304
HP15_3305: HP15_3305 - molybdate ABC transporter, inner membrane subunit, at 3,462,633 to 3,463,313
_3305
Position (kb)
3460
3461
3462 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3460.065 kb on + strand, within HP15_3302 at 3460.120 kb on + strand, within HP15_3302 at 3460.174 kb on + strand, within HP15_3302 at 3460.182 kb on - strand, within HP15_3302 at 3460.202 kb on + strand, within HP15_3302 at 3460.202 kb on + strand, within HP15_3302 at 3460.211 kb on - strand, within HP15_3302 at 3460.211 kb on - strand, within HP15_3302 at 3460.277 kb on + strand, within HP15_3302 at 3460.308 kb on + strand, within HP15_3302 at 3460.314 kb on + strand, within HP15_3302 at 3460.314 kb on + strand, within HP15_3302 at 3460.388 kb on - strand, within HP15_3302 at 3460.429 kb on - strand, within HP15_3302 at 3460.456 kb on + strand, within HP15_3302 at 3460.481 kb on + strand, within HP15_3302 at 3460.481 kb on + strand, within HP15_3302 at 3460.482 kb on + strand, within HP15_3302 at 3460.484 kb on - strand, within HP15_3302 at 3460.712 kb on - strand, within HP15_3302 at 3460.716 kb on - strand, within HP15_3302 at 3460.733 kb on - strand, within HP15_3302 at 3460.749 kb on - strand, within HP15_3302 at 3460.905 kb on - strand at 3461.121 kb on - strand, within HP15_3303 at 3461.185 kb on + strand, within HP15_3303 at 3461.235 kb on + strand, within HP15_3303 at 3461.238 kb on - strand, within HP15_3303 at 3461.240 kb on + strand, within HP15_3303 at 3461.248 kb on - strand, within HP15_3303 at 3461.248 kb on - strand, within HP15_3303 at 3461.248 kb on - strand, within HP15_3303 at 3461.275 kb on + strand, within HP15_3303 at 3461.283 kb on - strand, within HP15_3303 at 3461.283 kb on - strand, within HP15_3303 at 3461.354 kb on + strand, within HP15_3303 at 3461.398 kb on + strand, within HP15_3303 at 3461.398 kb on + strand, within HP15_3303 at 3461.465 kb on + strand, within HP15_3303 at 3461.513 kb on - strand, within HP15_3303 at 3461.783 kb on + strand at 3461.783 kb on + strand at 3461.820 kb on + strand at 3461.950 kb on - strand, within HP15_3304 at 3461.975 kb on + strand, within HP15_3304 at 3462.037 kb on - strand, within HP15_3304 at 3462.095 kb on - strand, within HP15_3304 at 3462.105 kb on + strand, within HP15_3304 at 3462.110 kb on + strand, within HP15_3304 at 3462.113 kb on - strand, within HP15_3304 at 3462.118 kb on - strand, within HP15_3304 at 3462.118 kb on - strand, within HP15_3304 at 3462.118 kb on - strand, within HP15_3304 at 3462.118 kb on - strand, within HP15_3304 at 3462.135 kb on + strand, within HP15_3304 at 3462.142 kb on - strand, within HP15_3304 at 3462.154 kb on + strand, within HP15_3304 at 3462.184 kb on - strand, within HP15_3304 at 3462.227 kb on + strand, within HP15_3304 at 3462.245 kb on + strand, within HP15_3304 at 3462.280 kb on + strand, within HP15_3304 at 3462.367 kb on + strand, within HP15_3304 at 3462.458 kb on + strand, within HP15_3304 at 3462.466 kb on - strand, within HP15_3304 at 3462.480 kb on - strand, within HP15_3304 at 3462.516 kb on - strand, within HP15_3304 at 3462.675 kb on - strand at 3462.807 kb on + strand, within HP15_3305 at 3462.814 kb on + strand, within HP15_3305
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 3,460,065 + HP15_3302 0.13 -0.4 3,460,120 + HP15_3302 0.19 -3.2 3,460,174 + HP15_3302 0.25 +1.3 3,460,182 - HP15_3302 0.25 +1.4 3,460,202 + HP15_3302 0.27 -1.8 3,460,202 + HP15_3302 0.27 +1.1 3,460,211 - HP15_3302 0.28 +0.0 3,460,211 - HP15_3302 0.28 -2.5 3,460,277 + HP15_3302 0.35 -3.1 3,460,308 + HP15_3302 0.38 +0.4 3,460,314 + HP15_3302 0.39 +0.7 3,460,314 + HP15_3302 0.39 -2.8 3,460,388 - HP15_3302 0.46 +0.2 3,460,429 - HP15_3302 0.50 +0.6 3,460,456 + HP15_3302 0.53 +0.1 3,460,481 + HP15_3302 0.56 -1.3 3,460,481 + HP15_3302 0.56 +0.1 3,460,482 + HP15_3302 0.56 -1.2 3,460,484 - HP15_3302 0.56 +0.5 3,460,712 - HP15_3302 0.79 -1.1 3,460,716 - HP15_3302 0.79 +0.5 3,460,733 - HP15_3302 0.81 -0.7 3,460,749 - HP15_3302 0.83 +0.1 3,460,905 - +0.3 3,461,121 - HP15_3303 0.15 +0.1 3,461,185 + HP15_3303 0.23 +0.6 3,461,235 + HP15_3303 0.29 -2.4 3,461,238 - HP15_3303 0.29 -1.4 3,461,240 + HP15_3303 0.29 +0.2 3,461,248 - HP15_3303 0.30 -0.4 3,461,248 - HP15_3303 0.30 +0.3 3,461,248 - HP15_3303 0.30 +0.7 3,461,275 + HP15_3303 0.33 -3.1 3,461,283 - HP15_3303 0.34 -0.2 3,461,283 - HP15_3303 0.34 -1.2 3,461,354 + HP15_3303 0.43 -0.0 3,461,398 + HP15_3303 0.48 +0.4 3,461,398 + HP15_3303 0.48 -0.1 3,461,465 + HP15_3303 0.55 +0.6 3,461,513 - HP15_3303 0.61 +0.6 3,461,783 + +1.0 3,461,783 + +1.5 3,461,820 + -0.8 3,461,950 - HP15_3304 0.15 -0.7 3,461,975 + HP15_3304 0.18 -4.2 3,462,037 - HP15_3304 0.26 +0.3 3,462,095 - HP15_3304 0.33 +0.8 3,462,105 + HP15_3304 0.34 +0.2 3,462,110 + HP15_3304 0.35 +0.7 3,462,113 - HP15_3304 0.35 -0.5 3,462,118 - HP15_3304 0.36 +0.1 3,462,118 - HP15_3304 0.36 +1.1 3,462,118 - HP15_3304 0.36 +0.3 3,462,118 - HP15_3304 0.36 +0.5 3,462,135 + HP15_3304 0.38 +1.4 3,462,142 - HP15_3304 0.39 -0.1 3,462,154 + HP15_3304 0.40 -2.7 3,462,184 - HP15_3304 0.44 +0.6 3,462,227 + HP15_3304 0.49 -4.8 3,462,245 + HP15_3304 0.52 -0.3 3,462,280 + HP15_3304 0.56 +0.3 3,462,367 + HP15_3304 0.67 +0.2 3,462,458 + HP15_3304 0.78 -1.7 3,462,466 - HP15_3304 0.79 -0.3 3,462,480 - HP15_3304 0.81 -3.8 3,462,516 - HP15_3304 0.85 -2.9 3,462,675 - -4.0 3,462,807 + HP15_3305 0.26 +0.1 3,462,814 + HP15_3305 0.27 +0.4
Or see this region's nucleotide sequence