Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3130 and HP15_3131 overlap by 4 nucleotides HP15_3131 and HP15_3132 are separated by 27 nucleotides
HP15_3130: HP15_3130 - phosphohydrolase, at 3,282,505 to 3,283,509
_3130
HP15_3131: HP15_3131 - hypothetical protein, at 3,283,506 to 3,283,988
_3131
HP15_3132: HP15_3132 - fumarate hydratase class II, at 3,284,016 to 3,285,392
_3132
Position (kb)
3283
3284 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3282.554 kb on - strand at 3282.564 kb on - strand at 3282.610 kb on + strand, within HP15_3130 at 3282.610 kb on + strand, within HP15_3130 at 3282.618 kb on - strand, within HP15_3130 at 3282.618 kb on - strand, within HP15_3130 at 3282.713 kb on + strand, within HP15_3130 at 3282.757 kb on + strand, within HP15_3130 at 3282.783 kb on - strand, within HP15_3130 at 3282.903 kb on - strand, within HP15_3130 at 3282.903 kb on - strand, within HP15_3130 at 3282.950 kb on + strand, within HP15_3130 at 3283.011 kb on - strand, within HP15_3130 at 3283.021 kb on + strand, within HP15_3130 at 3283.044 kb on - strand, within HP15_3130 at 3283.132 kb on + strand, within HP15_3130 at 3283.133 kb on + strand, within HP15_3130 at 3283.138 kb on + strand, within HP15_3130 at 3283.140 kb on - strand, within HP15_3130 at 3283.140 kb on - strand, within HP15_3130 at 3283.171 kb on - strand, within HP15_3130 at 3283.187 kb on + strand, within HP15_3130 at 3283.209 kb on - strand, within HP15_3130 at 3283.236 kb on + strand, within HP15_3130 at 3283.241 kb on + strand, within HP15_3130 at 3283.249 kb on - strand, within HP15_3130 at 3283.315 kb on + strand, within HP15_3130 at 3283.323 kb on - strand, within HP15_3130 at 3283.323 kb on - strand, within HP15_3130 at 3283.418 kb on - strand at 3283.418 kb on - strand at 3283.419 kb on - strand at 3283.558 kb on + strand, within HP15_3131 at 3283.566 kb on - strand, within HP15_3131 at 3283.568 kb on + strand, within HP15_3131 at 3283.569 kb on + strand, within HP15_3131 at 3283.719 kb on + strand, within HP15_3131 at 3283.722 kb on + strand, within HP15_3131 at 3283.801 kb on + strand, within HP15_3131 at 3283.806 kb on + strand, within HP15_3131 at 3283.818 kb on + strand, within HP15_3131 at 3283.818 kb on + strand, within HP15_3131 at 3283.942 kb on + strand at 3283.978 kb on - strand at 3284.008 kb on - strand at 3284.088 kb on + strand at 3284.103 kb on + strand at 3284.200 kb on - strand, within HP15_3132 at 3284.335 kb on + strand, within HP15_3132 at 3284.368 kb on - strand, within HP15_3132 at 3284.382 kb on + strand, within HP15_3132 at 3284.382 kb on + strand, within HP15_3132 at 3284.385 kb on - strand, within HP15_3132 at 3284.385 kb on - strand, within HP15_3132 at 3284.389 kb on + strand, within HP15_3132 at 3284.390 kb on - strand, within HP15_3132 at 3284.390 kb on - strand, within HP15_3132 at 3284.450 kb on + strand, within HP15_3132 at 3284.487 kb on + strand, within HP15_3132 at 3284.542 kb on + strand, within HP15_3132 at 3284.589 kb on - strand, within HP15_3132 at 3284.653 kb on + strand, within HP15_3132 at 3284.653 kb on + strand, within HP15_3132 at 3284.661 kb on - strand, within HP15_3132 at 3284.661 kb on - strand, within HP15_3132 at 3284.720 kb on + strand, within HP15_3132 at 3284.725 kb on + strand, within HP15_3132 at 3284.738 kb on - strand, within HP15_3132 at 3284.793 kb on - strand, within HP15_3132 at 3284.827 kb on - strand, within HP15_3132 at 3284.852 kb on + strand, within HP15_3132 at 3284.916 kb on - strand, within HP15_3132
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 3,282,554 - -0.0 3,282,564 - -0.2 3,282,610 + HP15_3130 0.10 +0.9 3,282,610 + HP15_3130 0.10 -0.6 3,282,618 - HP15_3130 0.11 -0.1 3,282,618 - HP15_3130 0.11 -0.3 3,282,713 + HP15_3130 0.21 -0.7 3,282,757 + HP15_3130 0.25 +0.8 3,282,783 - HP15_3130 0.28 -3.0 3,282,903 - HP15_3130 0.40 +0.0 3,282,903 - HP15_3130 0.40 -2.4 3,282,950 + HP15_3130 0.44 -3.1 3,283,011 - HP15_3130 0.50 -0.0 3,283,021 + HP15_3130 0.51 +0.6 3,283,044 - HP15_3130 0.54 +0.3 3,283,132 + HP15_3130 0.62 +0.4 3,283,133 + HP15_3130 0.62 +0.2 3,283,138 + HP15_3130 0.63 -0.1 3,283,140 - HP15_3130 0.63 -3.2 3,283,140 - HP15_3130 0.63 +0.2 3,283,171 - HP15_3130 0.66 +0.3 3,283,187 + HP15_3130 0.68 +1.5 3,283,209 - HP15_3130 0.70 +0.3 3,283,236 + HP15_3130 0.73 +0.2 3,283,241 + HP15_3130 0.73 -0.1 3,283,249 - HP15_3130 0.74 +0.3 3,283,315 + HP15_3130 0.81 +0.1 3,283,323 - HP15_3130 0.81 -0.6 3,283,323 - HP15_3130 0.81 +0.0 3,283,418 - +0.7 3,283,418 - +0.1 3,283,419 - -1.5 3,283,558 + HP15_3131 0.11 +0.3 3,283,566 - HP15_3131 0.12 +1.2 3,283,568 + HP15_3131 0.13 -3.1 3,283,569 + HP15_3131 0.13 +1.3 3,283,719 + HP15_3131 0.44 +0.7 3,283,722 + HP15_3131 0.45 -2.4 3,283,801 + HP15_3131 0.61 +0.5 3,283,806 + HP15_3131 0.62 +0.3 3,283,818 + HP15_3131 0.65 -1.1 3,283,818 + HP15_3131 0.65 -0.6 3,283,942 + -3.0 3,283,978 - +0.1 3,284,008 - -0.1 3,284,088 + +0.2 3,284,103 + +0.7 3,284,200 - HP15_3132 0.13 +0.7 3,284,335 + HP15_3132 0.23 -3.0 3,284,368 - HP15_3132 0.26 -4.1 3,284,382 + HP15_3132 0.27 +0.3 3,284,382 + HP15_3132 0.27 -0.1 3,284,385 - HP15_3132 0.27 -2.2 3,284,385 - HP15_3132 0.27 +0.3 3,284,389 + HP15_3132 0.27 +0.8 3,284,390 - HP15_3132 0.27 -0.6 3,284,390 - HP15_3132 0.27 -1.0 3,284,450 + HP15_3132 0.32 -3.5 3,284,487 + HP15_3132 0.34 +0.3 3,284,542 + HP15_3132 0.38 +0.5 3,284,589 - HP15_3132 0.42 -3.5 3,284,653 + HP15_3132 0.46 +0.1 3,284,653 + HP15_3132 0.46 +0.6 3,284,661 - HP15_3132 0.47 +0.6 3,284,661 - HP15_3132 0.47 +0.1 3,284,720 + HP15_3132 0.51 -1.8 3,284,725 + HP15_3132 0.51 +0.2 3,284,738 - HP15_3132 0.52 +0.7 3,284,793 - HP15_3132 0.56 +1.3 3,284,827 - HP15_3132 0.59 -0.5 3,284,852 + HP15_3132 0.61 -0.5 3,284,916 - HP15_3132 0.65 +0.7
Or see this region's nucleotide sequence