Strain Fitness in Marinobacter adhaerens HP15 around HP15_3131

Experiment: Control growth in Pro99_seawater

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3130 and HP15_3131 overlap by 4 nucleotidesHP15_3131 and HP15_3132 are separated by 27 nucleotides HP15_3130: HP15_3130 - phosphohydrolase, at 3,282,505 to 3,283,509 _3130 HP15_3131: HP15_3131 - hypothetical protein, at 3,283,506 to 3,283,988 _3131 HP15_3132: HP15_3132 - fumarate hydratase class II, at 3,284,016 to 3,285,392 _3132 Position (kb) 3283 3284Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3282.554 kb on - strandat 3282.564 kb on - strandat 3282.610 kb on + strand, within HP15_3130at 3282.610 kb on + strand, within HP15_3130at 3282.618 kb on - strand, within HP15_3130at 3282.618 kb on - strand, within HP15_3130at 3282.713 kb on + strand, within HP15_3130at 3282.757 kb on + strand, within HP15_3130at 3282.783 kb on - strand, within HP15_3130at 3282.903 kb on - strand, within HP15_3130at 3282.903 kb on - strand, within HP15_3130at 3282.950 kb on + strand, within HP15_3130at 3283.011 kb on - strand, within HP15_3130at 3283.021 kb on + strand, within HP15_3130at 3283.044 kb on - strand, within HP15_3130at 3283.132 kb on + strand, within HP15_3130at 3283.133 kb on + strand, within HP15_3130at 3283.138 kb on + strand, within HP15_3130at 3283.140 kb on - strand, within HP15_3130at 3283.140 kb on - strand, within HP15_3130at 3283.171 kb on - strand, within HP15_3130at 3283.187 kb on + strand, within HP15_3130at 3283.209 kb on - strand, within HP15_3130at 3283.236 kb on + strand, within HP15_3130at 3283.241 kb on + strand, within HP15_3130at 3283.249 kb on - strand, within HP15_3130at 3283.315 kb on + strand, within HP15_3130at 3283.323 kb on - strand, within HP15_3130at 3283.323 kb on - strand, within HP15_3130at 3283.418 kb on - strandat 3283.418 kb on - strandat 3283.419 kb on - strandat 3283.558 kb on + strand, within HP15_3131at 3283.566 kb on - strand, within HP15_3131at 3283.568 kb on + strand, within HP15_3131at 3283.569 kb on + strand, within HP15_3131at 3283.719 kb on + strand, within HP15_3131at 3283.722 kb on + strand, within HP15_3131at 3283.801 kb on + strand, within HP15_3131at 3283.806 kb on + strand, within HP15_3131at 3283.818 kb on + strand, within HP15_3131at 3283.818 kb on + strand, within HP15_3131at 3283.942 kb on + strandat 3283.978 kb on - strandat 3284.008 kb on - strandat 3284.088 kb on + strandat 3284.103 kb on + strandat 3284.200 kb on - strand, within HP15_3132at 3284.335 kb on + strand, within HP15_3132at 3284.368 kb on - strand, within HP15_3132at 3284.382 kb on + strand, within HP15_3132at 3284.382 kb on + strand, within HP15_3132at 3284.385 kb on - strand, within HP15_3132at 3284.385 kb on - strand, within HP15_3132at 3284.389 kb on + strand, within HP15_3132at 3284.390 kb on - strand, within HP15_3132at 3284.390 kb on - strand, within HP15_3132at 3284.450 kb on + strand, within HP15_3132at 3284.487 kb on + strand, within HP15_3132at 3284.542 kb on + strand, within HP15_3132at 3284.589 kb on - strand, within HP15_3132at 3284.653 kb on + strand, within HP15_3132at 3284.653 kb on + strand, within HP15_3132at 3284.661 kb on - strand, within HP15_3132at 3284.661 kb on - strand, within HP15_3132at 3284.720 kb on + strand, within HP15_3132at 3284.725 kb on + strand, within HP15_3132at 3284.738 kb on - strand, within HP15_3132at 3284.793 kb on - strand, within HP15_3132at 3284.827 kb on - strand, within HP15_3132at 3284.852 kb on + strand, within HP15_3132at 3284.916 kb on - strand, within HP15_3132

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
remove
3,282,554 - -0.0
3,282,564 - -0.2
3,282,610 + HP15_3130 0.10 +0.9
3,282,610 + HP15_3130 0.10 -0.6
3,282,618 - HP15_3130 0.11 -0.1
3,282,618 - HP15_3130 0.11 -0.3
3,282,713 + HP15_3130 0.21 -0.7
3,282,757 + HP15_3130 0.25 +0.8
3,282,783 - HP15_3130 0.28 -3.0
3,282,903 - HP15_3130 0.40 +0.0
3,282,903 - HP15_3130 0.40 -2.4
3,282,950 + HP15_3130 0.44 -3.1
3,283,011 - HP15_3130 0.50 -0.0
3,283,021 + HP15_3130 0.51 +0.6
3,283,044 - HP15_3130 0.54 +0.3
3,283,132 + HP15_3130 0.62 +0.4
3,283,133 + HP15_3130 0.62 +0.2
3,283,138 + HP15_3130 0.63 -0.1
3,283,140 - HP15_3130 0.63 -3.2
3,283,140 - HP15_3130 0.63 +0.2
3,283,171 - HP15_3130 0.66 +0.3
3,283,187 + HP15_3130 0.68 +1.5
3,283,209 - HP15_3130 0.70 +0.3
3,283,236 + HP15_3130 0.73 +0.2
3,283,241 + HP15_3130 0.73 -0.1
3,283,249 - HP15_3130 0.74 +0.3
3,283,315 + HP15_3130 0.81 +0.1
3,283,323 - HP15_3130 0.81 -0.6
3,283,323 - HP15_3130 0.81 +0.0
3,283,418 - +0.7
3,283,418 - +0.1
3,283,419 - -1.5
3,283,558 + HP15_3131 0.11 +0.3
3,283,566 - HP15_3131 0.12 +1.2
3,283,568 + HP15_3131 0.13 -3.1
3,283,569 + HP15_3131 0.13 +1.3
3,283,719 + HP15_3131 0.44 +0.7
3,283,722 + HP15_3131 0.45 -2.4
3,283,801 + HP15_3131 0.61 +0.5
3,283,806 + HP15_3131 0.62 +0.3
3,283,818 + HP15_3131 0.65 -1.1
3,283,818 + HP15_3131 0.65 -0.6
3,283,942 + -3.0
3,283,978 - +0.1
3,284,008 - -0.1
3,284,088 + +0.2
3,284,103 + +0.7
3,284,200 - HP15_3132 0.13 +0.7
3,284,335 + HP15_3132 0.23 -3.0
3,284,368 - HP15_3132 0.26 -4.1
3,284,382 + HP15_3132 0.27 +0.3
3,284,382 + HP15_3132 0.27 -0.1
3,284,385 - HP15_3132 0.27 -2.2
3,284,385 - HP15_3132 0.27 +0.3
3,284,389 + HP15_3132 0.27 +0.8
3,284,390 - HP15_3132 0.27 -0.6
3,284,390 - HP15_3132 0.27 -1.0
3,284,450 + HP15_3132 0.32 -3.5
3,284,487 + HP15_3132 0.34 +0.3
3,284,542 + HP15_3132 0.38 +0.5
3,284,589 - HP15_3132 0.42 -3.5
3,284,653 + HP15_3132 0.46 +0.1
3,284,653 + HP15_3132 0.46 +0.6
3,284,661 - HP15_3132 0.47 +0.6
3,284,661 - HP15_3132 0.47 +0.1
3,284,720 + HP15_3132 0.51 -1.8
3,284,725 + HP15_3132 0.51 +0.2
3,284,738 - HP15_3132 0.52 +0.7
3,284,793 - HP15_3132 0.56 +1.3
3,284,827 - HP15_3132 0.59 -0.5
3,284,852 + HP15_3132 0.61 -0.5
3,284,916 - HP15_3132 0.65 +0.7

Or see this region's nucleotide sequence