Strain Fitness in Marinobacter adhaerens HP15 around HP15_2938

Experiment: Control growth in Pro99_seawater

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2936 and HP15_2937 overlap by 4 nucleotidesHP15_2937 and HP15_2938 overlap by 4 nucleotidesHP15_2938 and HP15_2939 are separated by 156 nucleotidesHP15_2939 and HP15_2940 are separated by 17 nucleotides HP15_2936: HP15_2936 - periplasmic sensor signal transduction histidine kinase, at 3,078,059 to 3,079,396 _2936 HP15_2937: HP15_2937 - two component transcriptional regulator, winged helix family, at 3,079,393 to 3,080,064 _2937 HP15_2938: HP15_2938 - propeptide, PepSY amd peptidase M4, at 3,080,061 to 3,080,432 _2938 HP15_2939: HP15_2939 - conserved hypothetical protein, secreted, at 3,080,589 to 3,081,059 _2939 HP15_2940: HP15_2940 - conserved hypothetical protein, at 3,081,077 to 3,082,999 _2940 Position (kb) 3080 3081Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3079.204 kb on + strand, within HP15_2936at 3079.237 kb on + strand, within HP15_2936at 3079.268 kb on + strandat 3079.421 kb on + strandat 3079.523 kb on + strand, within HP15_2937at 3079.578 kb on + strand, within HP15_2937at 3079.650 kb on - strand, within HP15_2937at 3079.704 kb on - strand, within HP15_2937at 3079.814 kb on - strand, within HP15_2937at 3079.871 kb on + strand, within HP15_2937at 3080.312 kb on - strand, within HP15_2938at 3080.442 kb on - strandat 3080.487 kb on + strandat 3080.572 kb on + strandat 3080.673 kb on + strand, within HP15_2939at 3080.714 kb on + strand, within HP15_2939at 3080.796 kb on - strand, within HP15_2939at 3080.832 kb on - strand, within HP15_2939at 3080.923 kb on + strand, within HP15_2939at 3080.923 kb on + strand, within HP15_2939at 3080.971 kb on + strand, within HP15_2939at 3080.971 kb on + strand, within HP15_2939at 3080.979 kb on - strand, within HP15_2939at 3081.037 kb on - strandat 3081.212 kb on + strandat 3081.212 kb on + strandat 3081.220 kb on - strandat 3081.242 kb on - strandat 3081.242 kb on - strandat 3081.281 kb on - strand, within HP15_2940at 3081.308 kb on - strand, within HP15_2940at 3081.336 kb on + strand, within HP15_2940at 3081.357 kb on + strand, within HP15_2940at 3081.357 kb on + strand, within HP15_2940at 3081.365 kb on - strand, within HP15_2940at 3081.384 kb on - strand, within HP15_2940at 3081.392 kb on + strand, within HP15_2940at 3081.397 kb on + strand, within HP15_2940at 3081.410 kb on - strand, within HP15_2940at 3081.426 kb on + strand, within HP15_2940at 3081.428 kb on - strand, within HP15_2940

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Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
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3,079,204 + HP15_2936 0.86 -0.2
3,079,237 + HP15_2936 0.88 -1.2
3,079,268 + +0.2
3,079,421 + -1.9
3,079,523 + HP15_2937 0.19 +0.6
3,079,578 + HP15_2937 0.28 -2.2
3,079,650 - HP15_2937 0.38 +0.7
3,079,704 - HP15_2937 0.46 -0.0
3,079,814 - HP15_2937 0.63 -0.0
3,079,871 + HP15_2937 0.71 -2.0
3,080,312 - HP15_2938 0.67 -2.5
3,080,442 - +0.1
3,080,487 + -3.6
3,080,572 + +0.2
3,080,673 + HP15_2939 0.18 +0.9
3,080,714 + HP15_2939 0.27 +0.9
3,080,796 - HP15_2939 0.44 -3.2
3,080,832 - HP15_2939 0.52 +0.1
3,080,923 + HP15_2939 0.71 +0.3
3,080,923 + HP15_2939 0.71 -3.5
3,080,971 + HP15_2939 0.81 +0.1
3,080,971 + HP15_2939 0.81 +0.3
3,080,979 - HP15_2939 0.83 -2.4
3,081,037 - +0.6
3,081,212 + -0.9
3,081,212 + -0.0
3,081,220 - -2.7
3,081,242 - -0.0
3,081,242 - -0.5
3,081,281 - HP15_2940 0.11 +0.7
3,081,308 - HP15_2940 0.12 +1.0
3,081,336 + HP15_2940 0.13 -2.4
3,081,357 + HP15_2940 0.15 -0.4
3,081,357 + HP15_2940 0.15 -0.2
3,081,365 - HP15_2940 0.15 -1.4
3,081,384 - HP15_2940 0.16 +0.7
3,081,392 + HP15_2940 0.16 -4.0
3,081,397 + HP15_2940 0.17 +0.3
3,081,410 - HP15_2940 0.17 -0.3
3,081,426 + HP15_2940 0.18 +0.0
3,081,428 - HP15_2940 0.18 -0.1

Or see this region's nucleotide sequence