Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2924 and HP15_2925 are separated by 158 nucleotides HP15_2925 and HP15_2926 are separated by 29 nucleotides HP15_2926 and HP15_2927 are separated by 119 nucleotides
HP15_2924: HP15_2924 - conserved hypothetical protein, at 3,061,953 to 3,063,536
_2924
HP15_2925: HP15_2925 - adenosylmethionine-8-amino-7-oxononanoate transaminase, at 3,063,695 to 3,065,047
_2925
HP15_2926: HP15_2926 - ribosomal RNA small subunit methyltransferase E, at 3,065,077 to 3,065,811
_2926
HP15_2927: HP15_2927 - conserved hypothetical protein, membrane, at 3,065,931 to 3,067,160
_2927
Position (kb)
3063
3064
3065
3066 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3062.822 kb on - strand, within HP15_2924 at 3062.895 kb on + strand, within HP15_2924 at 3062.936 kb on + strand, within HP15_2924 at 3062.994 kb on - strand, within HP15_2924 at 3063.030 kb on - strand, within HP15_2924 at 3063.054 kb on + strand, within HP15_2924 at 3063.077 kb on - strand, within HP15_2924 at 3063.087 kb on - strand, within HP15_2924 at 3063.107 kb on - strand, within HP15_2924 at 3063.177 kb on + strand, within HP15_2924 at 3063.291 kb on + strand, within HP15_2924 at 3063.294 kb on - strand, within HP15_2924 at 3063.577 kb on + strand at 3063.667 kb on + strand at 3063.687 kb on + strand at 3063.695 kb on - strand at 3063.710 kb on - strand at 3063.712 kb on + strand at 3063.722 kb on + strand at 3063.807 kb on - strand at 3063.813 kb on + strand at 3063.823 kb on + strand at 3063.850 kb on + strand, within HP15_2925 at 3063.880 kb on - strand, within HP15_2925 at 3063.951 kb on + strand, within HP15_2925 at 3064.010 kb on + strand, within HP15_2925 at 3064.119 kb on + strand, within HP15_2925 at 3064.146 kb on + strand, within HP15_2925 at 3064.186 kb on + strand, within HP15_2925 at 3064.407 kb on + strand, within HP15_2925 at 3064.440 kb on + strand, within HP15_2925 at 3064.500 kb on + strand, within HP15_2925 at 3064.547 kb on + strand, within HP15_2925 at 3064.548 kb on - strand, within HP15_2925 at 3064.588 kb on - strand, within HP15_2925 at 3064.590 kb on + strand, within HP15_2925 at 3064.637 kb on - strand, within HP15_2925 at 3064.670 kb on + strand, within HP15_2925 at 3064.708 kb on - strand, within HP15_2925 at 3064.734 kb on - strand, within HP15_2925 at 3064.745 kb on + strand, within HP15_2925 at 3064.789 kb on + strand, within HP15_2925 at 3064.803 kb on - strand, within HP15_2925 at 3064.875 kb on + strand, within HP15_2925 at 3064.950 kb on - strand at 3065.021 kb on + strand at 3065.022 kb on + strand at 3065.029 kb on - strand at 3065.029 kb on - strand at 3065.088 kb on - strand at 3065.094 kb on - strand at 3065.118 kb on + strand at 3065.118 kb on + strand at 3065.137 kb on + strand at 3065.193 kb on - strand, within HP15_2926 at 3065.279 kb on - strand, within HP15_2926 at 3065.330 kb on - strand, within HP15_2926 at 3065.337 kb on - strand, within HP15_2926 at 3065.352 kb on + strand, within HP15_2926 at 3065.396 kb on - strand, within HP15_2926 at 3065.430 kb on + strand, within HP15_2926 at 3065.497 kb on - strand, within HP15_2926 at 3065.560 kb on - strand, within HP15_2926 at 3065.877 kb on + strand at 3065.886 kb on - strand at 3066.035 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 3,062,822 - HP15_2924 0.55 -0.0 3,062,895 + HP15_2924 0.59 -0.8 3,062,936 + HP15_2924 0.62 -2.3 3,062,994 - HP15_2924 0.66 -0.0 3,063,030 - HP15_2924 0.68 +0.3 3,063,054 + HP15_2924 0.70 -2.3 3,063,077 - HP15_2924 0.71 -2.6 3,063,087 - HP15_2924 0.72 +0.5 3,063,107 - HP15_2924 0.73 +0.7 3,063,177 + HP15_2924 0.77 -3.6 3,063,291 + HP15_2924 0.84 +1.1 3,063,294 - HP15_2924 0.85 +0.2 3,063,577 + -1.6 3,063,667 + +0.6 3,063,687 + -0.1 3,063,695 - +0.5 3,063,710 - +0.0 3,063,712 + -1.0 3,063,722 + +0.1 3,063,807 - -1.8 3,063,813 + -0.6 3,063,823 + +0.8 3,063,850 + HP15_2925 0.11 -0.8 3,063,880 - HP15_2925 0.14 +0.3 3,063,951 + HP15_2925 0.19 -1.2 3,064,010 + HP15_2925 0.23 -0.5 3,064,119 + HP15_2925 0.31 -0.1 3,064,146 + HP15_2925 0.33 -0.5 3,064,186 + HP15_2925 0.36 -0.2 3,064,407 + HP15_2925 0.53 -4.2 3,064,440 + HP15_2925 0.55 +0.5 3,064,500 + HP15_2925 0.59 -0.2 3,064,547 + HP15_2925 0.63 -0.0 3,064,548 - HP15_2925 0.63 -2.9 3,064,588 - HP15_2925 0.66 -0.0 3,064,590 + HP15_2925 0.66 -0.2 3,064,637 - HP15_2925 0.70 -2.1 3,064,670 + HP15_2925 0.72 -2.4 3,064,708 - HP15_2925 0.75 -0.8 3,064,734 - HP15_2925 0.77 -0.5 3,064,745 + HP15_2925 0.78 -2.0 3,064,789 + HP15_2925 0.81 +0.1 3,064,803 - HP15_2925 0.82 -0.9 3,064,875 + HP15_2925 0.87 -0.3 3,064,950 - +0.1 3,065,021 + -1.6 3,065,022 + +0.9 3,065,029 - +1.4 3,065,029 - -0.6 3,065,088 - -3.3 3,065,094 - +0.0 3,065,118 + -2.7 3,065,118 + -3.7 3,065,137 + +1.7 3,065,193 - HP15_2926 0.16 -3.0 3,065,279 - HP15_2926 0.27 +0.7 3,065,330 - HP15_2926 0.34 -1.8 3,065,337 - HP15_2926 0.35 -0.4 3,065,352 + HP15_2926 0.37 +1.3 3,065,396 - HP15_2926 0.43 +0.6 3,065,430 + HP15_2926 0.48 +0.6 3,065,497 - HP15_2926 0.57 -2.3 3,065,560 - HP15_2926 0.66 -1.8 3,065,877 + +0.9 3,065,886 - +0.0 3,066,035 + +1.1
Or see this region's nucleotide sequence