Strain Fitness in Marinobacter adhaerens HP15 around HP15_2882

Experiment: Control growth in Pro99_seawater

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2881 and HP15_2882 are separated by 0 nucleotidesHP15_2882 and HP15_2883 are separated by 204 nucleotides HP15_2881: HP15_2881 - urea short-chain amide or branched-chain amino acid uptake ABC transporter periplasmic solute-binding protein, at 3,017,402 to 3,018,691 _2881 HP15_2882: HP15_2882 - hypothetical protein, at 3,018,692 to 3,018,856 _2882 HP15_2883: HP15_2883 - glutamyl-tRNA (Gln) amidotransferase subunit A, at 3,019,061 to 3,020,875 _2883 Position (kb) 3018 3019Strain fitness (log2 ratio) -3 -2 -1 0 1at 3017.756 kb on + strand, within HP15_2881at 3017.983 kb on + strand, within HP15_2881at 3017.991 kb on - strand, within HP15_2881at 3018.020 kb on - strand, within HP15_2881at 3018.098 kb on + strand, within HP15_2881at 3018.106 kb on - strand, within HP15_2881at 3018.141 kb on + strand, within HP15_2881at 3018.156 kb on - strand, within HP15_2881at 3018.195 kb on - strand, within HP15_2881at 3018.196 kb on + strand, within HP15_2881at 3018.228 kb on - strand, within HP15_2881at 3018.323 kb on + strand, within HP15_2881at 3018.333 kb on + strand, within HP15_2881at 3018.478 kb on - strand, within HP15_2881at 3018.558 kb on - strand, within HP15_2881at 3018.748 kb on - strand, within HP15_2882at 3018.763 kb on - strand, within HP15_2882at 3018.841 kb on - strandat 3018.870 kb on + strandat 3018.888 kb on + strandat 3018.905 kb on + strandat 3018.913 kb on + strandat 3018.918 kb on + strandat 3018.921 kb on - strandat 3018.926 kb on - strandat 3018.926 kb on - strandat 3019.002 kb on - strandat 3019.047 kb on + strandat 3019.095 kb on + strandat 3019.155 kb on + strandat 3019.201 kb on - strandat 3019.337 kb on + strand, within HP15_2883at 3019.381 kb on + strand, within HP15_2883at 3019.383 kb on - strand, within HP15_2883at 3019.447 kb on - strand, within HP15_2883at 3019.470 kb on - strand, within HP15_2883at 3019.482 kb on + strand, within HP15_2883at 3019.490 kb on - strand, within HP15_2883at 3019.490 kb on - strand, within HP15_2883at 3019.552 kb on - strand, within HP15_2883at 3019.606 kb on + strand, within HP15_2883at 3019.661 kb on + strand, within HP15_2883at 3019.714 kb on - strand, within HP15_2883at 3019.803 kb on + strand, within HP15_2883at 3019.832 kb on - strand, within HP15_2883

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Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
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3,017,756 + HP15_2881 0.27 -0.7
3,017,983 + HP15_2881 0.45 +1.3
3,017,991 - HP15_2881 0.46 -0.6
3,018,020 - HP15_2881 0.48 -2.2
3,018,098 + HP15_2881 0.54 -1.8
3,018,106 - HP15_2881 0.55 +1.2
3,018,141 + HP15_2881 0.57 -0.2
3,018,156 - HP15_2881 0.58 -0.6
3,018,195 - HP15_2881 0.61 +0.5
3,018,196 + HP15_2881 0.62 -0.0
3,018,228 - HP15_2881 0.64 +0.3
3,018,323 + HP15_2881 0.71 -0.1
3,018,333 + HP15_2881 0.72 -0.5
3,018,478 - HP15_2881 0.83 +0.5
3,018,558 - HP15_2881 0.90 +1.7
3,018,748 - HP15_2882 0.34 -1.8
3,018,763 - HP15_2882 0.43 +0.2
3,018,841 - -3.5
3,018,870 + +0.5
3,018,888 + -0.9
3,018,905 + -0.1
3,018,913 + +1.4
3,018,918 + -1.7
3,018,921 - +0.2
3,018,926 - -2.0
3,018,926 - -3.0
3,019,002 - -0.0
3,019,047 + -1.6
3,019,095 + -2.7
3,019,155 + -0.2
3,019,201 - +0.6
3,019,337 + HP15_2883 0.15 -0.4
3,019,381 + HP15_2883 0.18 +0.1
3,019,383 - HP15_2883 0.18 +0.5
3,019,447 - HP15_2883 0.21 +1.2
3,019,470 - HP15_2883 0.23 +0.6
3,019,482 + HP15_2883 0.23 +0.2
3,019,490 - HP15_2883 0.24 +0.8
3,019,490 - HP15_2883 0.24 +1.1
3,019,552 - HP15_2883 0.27 +0.3
3,019,606 + HP15_2883 0.30 +0.3
3,019,661 + HP15_2883 0.33 +0.2
3,019,714 - HP15_2883 0.36 -0.1
3,019,803 + HP15_2883 0.41 +0.1
3,019,832 - HP15_2883 0.42 -2.7

Or see this region's nucleotide sequence