Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_290 and HP15_291 are separated by 239 nucleotides HP15_291 and HP15_292 are separated by 31 nucleotides HP15_292 and HP15_293 are separated by 206 nucleotides
HP15_290: HP15_290 - twitching motility protein PilU PilT, at 281,044 to 282,165
_290
HP15_291: HP15_291 - membrane protein involved in aromatic hydrocarbon degradation, at 282,405 to 283,688
_291
HP15_292: HP15_292 - conserved hypothetical protein, at 283,720 to 284,121
_292
HP15_293: HP15_293 - DNA polymerase I, at 284,328 to 286,936
_293
Position (kb) 282
283
284 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 281.405 kb on - strand, within HP15_290 at 281.426 kb on - strand, within HP15_290 at 281.451 kb on + strand, within HP15_290 at 281.550 kb on + strand, within HP15_290 at 281.558 kb on - strand, within HP15_290 at 281.560 kb on - strand, within HP15_290 at 281.580 kb on + strand, within HP15_290 at 281.610 kb on + strand, within HP15_290 at 281.618 kb on - strand, within HP15_290 at 281.625 kb on - strand, within HP15_290 at 281.630 kb on + strand, within HP15_290 at 281.641 kb on + strand, within HP15_290 at 281.754 kb on + strand, within HP15_290 at 281.801 kb on + strand, within HP15_290 at 281.834 kb on + strand, within HP15_290 at 281.837 kb on - strand, within HP15_290 at 281.898 kb on - strand, within HP15_290 at 281.903 kb on - strand, within HP15_290 at 281.903 kb on - strand, within HP15_290 at 281.903 kb on - strand, within HP15_290 at 281.945 kb on + strand, within HP15_290 at 281.990 kb on + strand, within HP15_290 at 282.123 kb on + strand at 282.177 kb on + strand at 282.252 kb on + strand at 282.316 kb on + strand at 282.355 kb on + strand at 282.594 kb on - strand, within HP15_291 at 282.594 kb on - strand, within HP15_291 at 282.594 kb on - strand, within HP15_291 at 282.706 kb on - strand, within HP15_291 at 282.725 kb on - strand, within HP15_291 at 282.765 kb on - strand, within HP15_291 at 282.849 kb on + strand, within HP15_291 at 282.898 kb on - strand, within HP15_291 at 282.930 kb on + strand, within HP15_291 at 282.966 kb on - strand, within HP15_291 at 282.981 kb on + strand, within HP15_291 at 283.004 kb on - strand, within HP15_291 at 283.014 kb on + strand, within HP15_291 at 283.022 kb on - strand, within HP15_291 at 283.100 kb on - strand, within HP15_291 at 283.122 kb on - strand, within HP15_291 at 283.122 kb on - strand, within HP15_291 at 283.149 kb on + strand, within HP15_291 at 283.162 kb on + strand, within HP15_291 at 283.170 kb on - strand, within HP15_291 at 283.418 kb on + strand, within HP15_291 at 283.622 kb on + strand at 283.622 kb on + strand at 283.735 kb on + strand at 283.781 kb on + strand, within HP15_292 at 283.817 kb on + strand, within HP15_292 at 283.817 kb on + strand, within HP15_292 at 283.822 kb on + strand, within HP15_292 at 283.830 kb on - strand, within HP15_292 at 283.931 kb on - strand, within HP15_292 at 284.090 kb on - strand at 284.164 kb on + strand at 284.294 kb on + strand at 284.315 kb on + strand at 284.315 kb on + strand at 284.315 kb on + strand at 284.315 kb on + strand at 284.315 kb on + strand at 284.531 kb on - strand at 284.571 kb on - strand at 284.571 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 281,405 - HP15_290 0.32 +0.4 281,426 - HP15_290 0.34 -2.6 281,451 + HP15_290 0.36 +0.3 281,550 + HP15_290 0.45 -3.2 281,558 - HP15_290 0.46 -0.9 281,560 - HP15_290 0.46 -1.4 281,580 + HP15_290 0.48 -1.6 281,610 + HP15_290 0.50 +0.6 281,618 - HP15_290 0.51 +0.3 281,625 - HP15_290 0.52 -1.3 281,630 + HP15_290 0.52 +0.9 281,641 + HP15_290 0.53 +0.3 281,754 + HP15_290 0.63 -3.7 281,801 + HP15_290 0.67 +0.4 281,834 + HP15_290 0.70 +0.2 281,837 - HP15_290 0.71 -0.2 281,898 - HP15_290 0.76 +0.8 281,903 - HP15_290 0.77 +0.6 281,903 - HP15_290 0.77 +0.6 281,903 - HP15_290 0.77 -0.1 281,945 + HP15_290 0.80 +0.3 281,990 + HP15_290 0.84 -0.5 282,123 + -0.1 282,177 + +0.0 282,252 + +0.7 282,316 + -3.1 282,355 + -0.6 282,594 - HP15_291 0.15 -1.3 282,594 - HP15_291 0.15 +0.1 282,594 - HP15_291 0.15 -0.6 282,706 - HP15_291 0.23 -3.1 282,725 - HP15_291 0.25 -1.0 282,765 - HP15_291 0.28 +0.4 282,849 + HP15_291 0.35 -2.8 282,898 - HP15_291 0.38 -0.2 282,930 + HP15_291 0.41 -1.2 282,966 - HP15_291 0.44 +0.3 282,981 + HP15_291 0.45 +0.3 283,004 - HP15_291 0.47 -2.9 283,014 + HP15_291 0.47 -0.4 283,022 - HP15_291 0.48 -3.5 283,100 - HP15_291 0.54 -0.6 283,122 - HP15_291 0.56 +0.0 283,122 - HP15_291 0.56 +0.3 283,149 + HP15_291 0.58 +0.7 283,162 + HP15_291 0.59 +1.7 283,170 - HP15_291 0.60 +0.3 283,418 + HP15_291 0.79 +0.0 283,622 + +0.2 283,622 + -1.8 283,735 + +0.7 283,781 + HP15_292 0.15 -2.7 283,817 + HP15_292 0.24 -0.6 283,817 + HP15_292 0.24 -2.3 283,822 + HP15_292 0.25 -0.1 283,830 - HP15_292 0.27 -0.1 283,931 - HP15_292 0.52 +0.1 284,090 - -2.2 284,164 + +1.1 284,294 + +0.7 284,315 + +0.3 284,315 + -0.3 284,315 + +0.5 284,315 + -2.0 284,315 + +0.1 284,531 - +1.1 284,571 - +0.3 284,571 - +0.7
Or see this region's nucleotide sequence