Strain Fitness in Marinobacter adhaerens HP15 around HP15_2749

Experiment: Control growth in Pro99_seawater

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2748 and HP15_2749 are separated by 134 nucleotidesHP15_2749 and HP15_2750 are separated by 121 nucleotides HP15_2748: HP15_2748 - transcriptional regulator, LysR family protein, at 2,898,996 to 2,899,892 _2748 HP15_2749: HP15_2749 - membrane protein containing DUF6, transmembrane, at 2,900,027 to 2,900,932 _2749 HP15_2750: HP15_2750 - protein containing carbamoyl phosphate synthetase, large subunit, ATP-binding / carboxyl transferase / carbamoyl phosphate synthase, large subunit, N-terminal / biotin carboxylase, C-terminal / biotin/lipoyl attachment, at 2,901,054 to 2,904,329 _2750 Position (kb) 2900 2901Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2899.107 kb on - strand, within HP15_2748at 2899.133 kb on + strand, within HP15_2748at 2899.245 kb on - strand, within HP15_2748at 2899.254 kb on + strand, within HP15_2748at 2899.609 kb on + strand, within HP15_2748at 2899.609 kb on - strand, within HP15_2748at 2899.703 kb on - strand, within HP15_2748at 2899.826 kb on + strandat 2899.834 kb on - strandat 2899.981 kb on + strandat 2899.989 kb on - strandat 2899.998 kb on + strandat 2899.998 kb on + strandat 2900.000 kb on + strandat 2900.006 kb on - strandat 2900.022 kb on + strandat 2900.030 kb on - strandat 2900.032 kb on - strandat 2900.199 kb on - strand, within HP15_2749at 2900.312 kb on - strand, within HP15_2749at 2900.481 kb on + strand, within HP15_2749at 2900.632 kb on + strand, within HP15_2749at 2900.710 kb on - strand, within HP15_2749at 2900.733 kb on - strand, within HP15_2749at 2900.747 kb on - strand, within HP15_2749at 2900.810 kb on + strand, within HP15_2749at 2900.852 kb on - strandat 2901.042 kb on + strandat 2901.267 kb on + strandat 2901.275 kb on - strandat 2901.275 kb on - strandat 2901.376 kb on + strandat 2901.468 kb on - strand, within HP15_2750at 2901.470 kb on - strand, within HP15_2750at 2901.523 kb on - strand, within HP15_2750at 2901.565 kb on + strand, within HP15_2750at 2901.609 kb on + strand, within HP15_2750at 2901.697 kb on + strand, within HP15_2750at 2901.831 kb on - strand, within HP15_2750at 2901.850 kb on + strand, within HP15_2750at 2901.873 kb on - strand, within HP15_2750

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
remove
2,899,107 - HP15_2748 0.12 +0.3
2,899,133 + HP15_2748 0.15 -0.4
2,899,245 - HP15_2748 0.28 -2.5
2,899,254 + HP15_2748 0.29 +0.7
2,899,609 + HP15_2748 0.68 -0.0
2,899,609 - HP15_2748 0.68 -0.4
2,899,703 - HP15_2748 0.79 -2.0
2,899,826 + +0.1
2,899,834 - -3.9
2,899,981 + -0.4
2,899,989 - -1.9
2,899,998 + -2.7
2,899,998 + +0.3
2,900,000 + -0.5
2,900,006 - +0.1
2,900,022 + +0.4
2,900,030 - -2.6
2,900,032 - -0.1
2,900,199 - HP15_2749 0.19 +0.7
2,900,312 - HP15_2749 0.31 -0.9
2,900,481 + HP15_2749 0.50 -1.5
2,900,632 + HP15_2749 0.67 -0.1
2,900,710 - HP15_2749 0.75 -3.6
2,900,733 - HP15_2749 0.78 -0.2
2,900,747 - HP15_2749 0.79 -4.6
2,900,810 + HP15_2749 0.86 -0.0
2,900,852 - +0.4
2,901,042 + +0.7
2,901,267 + -0.2
2,901,275 - -4.1
2,901,275 - -2.3
2,901,376 + +1.1
2,901,468 - HP15_2750 0.13 +0.8
2,901,470 - HP15_2750 0.13 -0.4
2,901,523 - HP15_2750 0.14 -0.7
2,901,565 + HP15_2750 0.16 -0.2
2,901,609 + HP15_2750 0.17 -0.1
2,901,697 + HP15_2750 0.20 -1.4
2,901,831 - HP15_2750 0.24 +0.5
2,901,850 + HP15_2750 0.24 +0.6
2,901,873 - HP15_2750 0.25 +0.2

Or see this region's nucleotide sequence