Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2748 and HP15_2749 are separated by 134 nucleotides HP15_2749 and HP15_2750 are separated by 121 nucleotides
HP15_2748: HP15_2748 - transcriptional regulator, LysR family protein, at 2,898,996 to 2,899,892
_2748
HP15_2749: HP15_2749 - membrane protein containing DUF6, transmembrane, at 2,900,027 to 2,900,932
_2749
HP15_2750: HP15_2750 - protein containing carbamoyl phosphate synthetase, large subunit, ATP-binding / carboxyl transferase / carbamoyl phosphate synthase, large subunit, N-terminal / biotin carboxylase, C-terminal / biotin/lipoyl attachment, at 2,901,054 to 2,904,329
_2750
Position (kb)
2900
2901 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2899.107 kb on - strand, within HP15_2748 at 2899.133 kb on + strand, within HP15_2748 at 2899.245 kb on - strand, within HP15_2748 at 2899.254 kb on + strand, within HP15_2748 at 2899.609 kb on + strand, within HP15_2748 at 2899.609 kb on - strand, within HP15_2748 at 2899.703 kb on - strand, within HP15_2748 at 2899.826 kb on + strand at 2899.834 kb on - strand at 2899.981 kb on + strand at 2899.989 kb on - strand at 2899.998 kb on + strand at 2899.998 kb on + strand at 2900.000 kb on + strand at 2900.006 kb on - strand at 2900.022 kb on + strand at 2900.030 kb on - strand at 2900.032 kb on - strand at 2900.199 kb on - strand, within HP15_2749 at 2900.312 kb on - strand, within HP15_2749 at 2900.481 kb on + strand, within HP15_2749 at 2900.632 kb on + strand, within HP15_2749 at 2900.710 kb on - strand, within HP15_2749 at 2900.733 kb on - strand, within HP15_2749 at 2900.747 kb on - strand, within HP15_2749 at 2900.810 kb on + strand, within HP15_2749 at 2900.852 kb on - strand at 2901.042 kb on + strand at 2901.267 kb on + strand at 2901.275 kb on - strand at 2901.275 kb on - strand at 2901.376 kb on + strand at 2901.468 kb on - strand, within HP15_2750 at 2901.470 kb on - strand, within HP15_2750 at 2901.523 kb on - strand, within HP15_2750 at 2901.565 kb on + strand, within HP15_2750 at 2901.609 kb on + strand, within HP15_2750 at 2901.697 kb on + strand, within HP15_2750 at 2901.831 kb on - strand, within HP15_2750 at 2901.850 kb on + strand, within HP15_2750 at 2901.873 kb on - strand, within HP15_2750
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 2,899,107 - HP15_2748 0.12 +0.3 2,899,133 + HP15_2748 0.15 -0.4 2,899,245 - HP15_2748 0.28 -2.5 2,899,254 + HP15_2748 0.29 +0.7 2,899,609 + HP15_2748 0.68 -0.0 2,899,609 - HP15_2748 0.68 -0.4 2,899,703 - HP15_2748 0.79 -2.0 2,899,826 + +0.1 2,899,834 - -3.9 2,899,981 + -0.4 2,899,989 - -1.9 2,899,998 + -2.7 2,899,998 + +0.3 2,900,000 + -0.5 2,900,006 - +0.1 2,900,022 + +0.4 2,900,030 - -2.6 2,900,032 - -0.1 2,900,199 - HP15_2749 0.19 +0.7 2,900,312 - HP15_2749 0.31 -0.9 2,900,481 + HP15_2749 0.50 -1.5 2,900,632 + HP15_2749 0.67 -0.1 2,900,710 - HP15_2749 0.75 -3.6 2,900,733 - HP15_2749 0.78 -0.2 2,900,747 - HP15_2749 0.79 -4.6 2,900,810 + HP15_2749 0.86 -0.0 2,900,852 - +0.4 2,901,042 + +0.7 2,901,267 + -0.2 2,901,275 - -4.1 2,901,275 - -2.3 2,901,376 + +1.1 2,901,468 - HP15_2750 0.13 +0.8 2,901,470 - HP15_2750 0.13 -0.4 2,901,523 - HP15_2750 0.14 -0.7 2,901,565 + HP15_2750 0.16 -0.2 2,901,609 + HP15_2750 0.17 -0.1 2,901,697 + HP15_2750 0.20 -1.4 2,901,831 - HP15_2750 0.24 +0.5 2,901,850 + HP15_2750 0.24 +0.6 2,901,873 - HP15_2750 0.25 +0.2
Or see this region's nucleotide sequence