Strain Fitness in Marinobacter adhaerens HP15 around HP15_2747

Experiment: Control growth in Pro99_seawater

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2745 and HP15_2746 are separated by 115 nucleotidesHP15_2746 and HP15_2747 are separated by 35 nucleotidesHP15_2747 and HP15_2748 are separated by 134 nucleotides HP15_2745: HP15_2745 - uncharacterized conserved protein UCP012641, at 2,896,129 to 2,897,094 _2745 HP15_2746: HP15_2746 - nitroreductase family protein, at 2,897,210 to 2,897,836 _2746 HP15_2747: HP15_2747 - polyketide cyclase, at 2,897,872 to 2,898,861 _2747 HP15_2748: HP15_2748 - transcriptional regulator, LysR family protein, at 2,898,996 to 2,899,892 _2748 Position (kb) 2897 2898 2899Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2896.893 kb on - strand, within HP15_2745at 2896.926 kb on + strand, within HP15_2745at 2896.955 kb on + strand, within HP15_2745at 2896.957 kb on + strand, within HP15_2745at 2896.999 kb on + strandat 2897.034 kb on - strandat 2897.034 kb on - strandat 2897.162 kb on - strandat 2897.162 kb on - strandat 2897.162 kb on - strandat 2897.162 kb on - strandat 2897.219 kb on + strandat 2897.288 kb on + strand, within HP15_2746at 2897.340 kb on - strand, within HP15_2746at 2897.518 kb on - strand, within HP15_2746at 2897.522 kb on - strand, within HP15_2746at 2897.564 kb on + strand, within HP15_2746at 2897.614 kb on + strand, within HP15_2746at 2897.624 kb on + strand, within HP15_2746at 2897.624 kb on + strand, within HP15_2746at 2897.624 kb on + strand, within HP15_2746at 2897.740 kb on - strand, within HP15_2746at 2897.821 kb on - strandat 2897.821 kb on - strandat 2897.885 kb on + strandat 2897.892 kb on - strandat 2897.892 kb on - strandat 2897.893 kb on - strandat 2897.943 kb on - strandat 2897.962 kb on + strandat 2897.970 kb on - strandat 2897.978 kb on - strand, within HP15_2747at 2897.988 kb on + strand, within HP15_2747at 2898.043 kb on + strand, within HP15_2747at 2898.050 kb on + strand, within HP15_2747at 2898.127 kb on + strand, within HP15_2747at 2898.421 kb on - strand, within HP15_2747at 2898.454 kb on + strand, within HP15_2747at 2898.523 kb on + strand, within HP15_2747at 2898.532 kb on - strand, within HP15_2747at 2898.569 kb on - strand, within HP15_2747at 2898.661 kb on - strand, within HP15_2747at 2898.720 kb on + strand, within HP15_2747at 2898.762 kb on + strand, within HP15_2747at 2898.892 kb on + strandat 2898.892 kb on + strandat 2898.892 kb on + strandat 2898.892 kb on + strandat 2898.892 kb on + strandat 2898.892 kb on + strandat 2898.892 kb on + strandat 2898.892 kb on + strandat 2898.892 kb on + strandat 2898.892 kb on + strandat 2898.892 kb on + strandat 2898.892 kb on + strandat 2898.892 kb on + strandat 2898.892 kb on + strandat 2898.892 kb on + strandat 2898.892 kb on + strandat 2898.900 kb on - strandat 2898.900 kb on - strandat 2898.900 kb on - strandat 2898.900 kb on - strandat 2898.900 kb on - strandat 2898.900 kb on - strandat 2898.900 kb on - strandat 2898.900 kb on - strandat 2898.900 kb on - strandat 2898.900 kb on - strandat 2898.900 kb on - strandat 2898.900 kb on - strandat 2898.900 kb on - strandat 2899.107 kb on - strand, within HP15_2748at 2899.133 kb on + strand, within HP15_2748at 2899.245 kb on - strand, within HP15_2748at 2899.254 kb on + strand, within HP15_2748at 2899.609 kb on + strand, within HP15_2748at 2899.609 kb on - strand, within HP15_2748at 2899.703 kb on - strand, within HP15_2748at 2899.826 kb on + strandat 2899.834 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
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2,896,893 - HP15_2745 0.79 +0.4
2,896,926 + HP15_2745 0.83 +0.5
2,896,955 + HP15_2745 0.86 -3.1
2,896,957 + HP15_2745 0.86 +0.4
2,896,999 + -0.5
2,897,034 - +0.2
2,897,034 - -0.2
2,897,162 - +0.4
2,897,162 - +0.4
2,897,162 - -0.4
2,897,162 - +0.3
2,897,219 + +0.5
2,897,288 + HP15_2746 0.12 -1.5
2,897,340 - HP15_2746 0.21 +0.0
2,897,518 - HP15_2746 0.49 -1.6
2,897,522 - HP15_2746 0.50 -4.5
2,897,564 + HP15_2746 0.56 -1.4
2,897,614 + HP15_2746 0.64 -2.2
2,897,624 + HP15_2746 0.66 +0.7
2,897,624 + HP15_2746 0.66 -1.0
2,897,624 + HP15_2746 0.66 -2.3
2,897,740 - HP15_2746 0.85 +0.4
2,897,821 - -0.2
2,897,821 - +0.2
2,897,885 + +0.8
2,897,892 - +0.6
2,897,892 - -0.9
2,897,893 - +0.3
2,897,943 - +0.6
2,897,962 + +1.7
2,897,970 - +0.2
2,897,978 - HP15_2747 0.11 +0.4
2,897,988 + HP15_2747 0.12 -0.4
2,898,043 + HP15_2747 0.17 +0.1
2,898,050 + HP15_2747 0.18 -3.3
2,898,127 + HP15_2747 0.26 +0.1
2,898,421 - HP15_2747 0.55 -0.8
2,898,454 + HP15_2747 0.59 +0.4
2,898,523 + HP15_2747 0.66 -1.0
2,898,532 - HP15_2747 0.67 +0.6
2,898,569 - HP15_2747 0.70 +0.1
2,898,661 - HP15_2747 0.80 -0.6
2,898,720 + HP15_2747 0.86 +0.5
2,898,762 + HP15_2747 0.90 +0.3
2,898,892 + -4.3
2,898,892 + -1.4
2,898,892 + +0.7
2,898,892 + -3.0
2,898,892 + +0.3
2,898,892 + +0.5
2,898,892 + +0.6
2,898,892 + -2.7
2,898,892 + -0.6
2,898,892 + +0.8
2,898,892 + -2.7
2,898,892 + +0.9
2,898,892 + -1.4
2,898,892 + -1.8
2,898,892 + +0.4
2,898,892 + -0.7
2,898,900 - +0.4
2,898,900 - -0.2
2,898,900 - -2.2
2,898,900 - +0.6
2,898,900 - -3.4
2,898,900 - +1.1
2,898,900 - -0.2
2,898,900 - +0.2
2,898,900 - +0.4
2,898,900 - -0.3
2,898,900 - +0.5
2,898,900 - -0.4
2,898,900 - -0.1
2,899,107 - HP15_2748 0.12 +0.3
2,899,133 + HP15_2748 0.15 -0.4
2,899,245 - HP15_2748 0.28 -2.5
2,899,254 + HP15_2748 0.29 +0.7
2,899,609 + HP15_2748 0.68 -0.0
2,899,609 - HP15_2748 0.68 -0.4
2,899,703 - HP15_2748 0.79 -2.0
2,899,826 + +0.1
2,899,834 - -3.9

Or see this region's nucleotide sequence