Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2745 and HP15_2746 are separated by 115 nucleotides HP15_2746 and HP15_2747 are separated by 35 nucleotides HP15_2747 and HP15_2748 are separated by 134 nucleotides
HP15_2745: HP15_2745 - uncharacterized conserved protein UCP012641, at 2,896,129 to 2,897,094
_2745
HP15_2746: HP15_2746 - nitroreductase family protein, at 2,897,210 to 2,897,836
_2746
HP15_2747: HP15_2747 - polyketide cyclase, at 2,897,872 to 2,898,861
_2747
HP15_2748: HP15_2748 - transcriptional regulator, LysR family protein, at 2,898,996 to 2,899,892
_2748
Position (kb)
2897
2898
2899 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2896.893 kb on - strand, within HP15_2745 at 2896.926 kb on + strand, within HP15_2745 at 2896.955 kb on + strand, within HP15_2745 at 2896.957 kb on + strand, within HP15_2745 at 2896.999 kb on + strand at 2897.034 kb on - strand at 2897.034 kb on - strand at 2897.162 kb on - strand at 2897.162 kb on - strand at 2897.162 kb on - strand at 2897.162 kb on - strand at 2897.219 kb on + strand at 2897.288 kb on + strand, within HP15_2746 at 2897.340 kb on - strand, within HP15_2746 at 2897.518 kb on - strand, within HP15_2746 at 2897.522 kb on - strand, within HP15_2746 at 2897.564 kb on + strand, within HP15_2746 at 2897.614 kb on + strand, within HP15_2746 at 2897.624 kb on + strand, within HP15_2746 at 2897.624 kb on + strand, within HP15_2746 at 2897.624 kb on + strand, within HP15_2746 at 2897.740 kb on - strand, within HP15_2746 at 2897.821 kb on - strand at 2897.821 kb on - strand at 2897.885 kb on + strand at 2897.892 kb on - strand at 2897.892 kb on - strand at 2897.893 kb on - strand at 2897.943 kb on - strand at 2897.962 kb on + strand at 2897.970 kb on - strand at 2897.978 kb on - strand, within HP15_2747 at 2897.988 kb on + strand, within HP15_2747 at 2898.043 kb on + strand, within HP15_2747 at 2898.050 kb on + strand, within HP15_2747 at 2898.127 kb on + strand, within HP15_2747 at 2898.421 kb on - strand, within HP15_2747 at 2898.454 kb on + strand, within HP15_2747 at 2898.523 kb on + strand, within HP15_2747 at 2898.532 kb on - strand, within HP15_2747 at 2898.569 kb on - strand, within HP15_2747 at 2898.661 kb on - strand, within HP15_2747 at 2898.720 kb on + strand, within HP15_2747 at 2898.762 kb on + strand, within HP15_2747 at 2898.892 kb on + strand at 2898.892 kb on + strand at 2898.892 kb on + strand at 2898.892 kb on + strand at 2898.892 kb on + strand at 2898.892 kb on + strand at 2898.892 kb on + strand at 2898.892 kb on + strand at 2898.892 kb on + strand at 2898.892 kb on + strand at 2898.892 kb on + strand at 2898.892 kb on + strand at 2898.892 kb on + strand at 2898.892 kb on + strand at 2898.892 kb on + strand at 2898.892 kb on + strand at 2898.900 kb on - strand at 2898.900 kb on - strand at 2898.900 kb on - strand at 2898.900 kb on - strand at 2898.900 kb on - strand at 2898.900 kb on - strand at 2898.900 kb on - strand at 2898.900 kb on - strand at 2898.900 kb on - strand at 2898.900 kb on - strand at 2898.900 kb on - strand at 2898.900 kb on - strand at 2898.900 kb on - strand at 2899.107 kb on - strand, within HP15_2748 at 2899.133 kb on + strand, within HP15_2748 at 2899.245 kb on - strand, within HP15_2748 at 2899.254 kb on + strand, within HP15_2748 at 2899.609 kb on + strand, within HP15_2748 at 2899.609 kb on - strand, within HP15_2748 at 2899.703 kb on - strand, within HP15_2748 at 2899.826 kb on + strand at 2899.834 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 2,896,893 - HP15_2745 0.79 +0.4 2,896,926 + HP15_2745 0.83 +0.5 2,896,955 + HP15_2745 0.86 -3.1 2,896,957 + HP15_2745 0.86 +0.4 2,896,999 + -0.5 2,897,034 - +0.2 2,897,034 - -0.2 2,897,162 - +0.4 2,897,162 - +0.4 2,897,162 - -0.4 2,897,162 - +0.3 2,897,219 + +0.5 2,897,288 + HP15_2746 0.12 -1.5 2,897,340 - HP15_2746 0.21 +0.0 2,897,518 - HP15_2746 0.49 -1.6 2,897,522 - HP15_2746 0.50 -4.5 2,897,564 + HP15_2746 0.56 -1.4 2,897,614 + HP15_2746 0.64 -2.2 2,897,624 + HP15_2746 0.66 +0.7 2,897,624 + HP15_2746 0.66 -1.0 2,897,624 + HP15_2746 0.66 -2.3 2,897,740 - HP15_2746 0.85 +0.4 2,897,821 - -0.2 2,897,821 - +0.2 2,897,885 + +0.8 2,897,892 - +0.6 2,897,892 - -0.9 2,897,893 - +0.3 2,897,943 - +0.6 2,897,962 + +1.7 2,897,970 - +0.2 2,897,978 - HP15_2747 0.11 +0.4 2,897,988 + HP15_2747 0.12 -0.4 2,898,043 + HP15_2747 0.17 +0.1 2,898,050 + HP15_2747 0.18 -3.3 2,898,127 + HP15_2747 0.26 +0.1 2,898,421 - HP15_2747 0.55 -0.8 2,898,454 + HP15_2747 0.59 +0.4 2,898,523 + HP15_2747 0.66 -1.0 2,898,532 - HP15_2747 0.67 +0.6 2,898,569 - HP15_2747 0.70 +0.1 2,898,661 - HP15_2747 0.80 -0.6 2,898,720 + HP15_2747 0.86 +0.5 2,898,762 + HP15_2747 0.90 +0.3 2,898,892 + -4.3 2,898,892 + -1.4 2,898,892 + +0.7 2,898,892 + -3.0 2,898,892 + +0.3 2,898,892 + +0.5 2,898,892 + +0.6 2,898,892 + -2.7 2,898,892 + -0.6 2,898,892 + +0.8 2,898,892 + -2.7 2,898,892 + +0.9 2,898,892 + -1.4 2,898,892 + -1.8 2,898,892 + +0.4 2,898,892 + -0.7 2,898,900 - +0.4 2,898,900 - -0.2 2,898,900 - -2.2 2,898,900 - +0.6 2,898,900 - -3.4 2,898,900 - +1.1 2,898,900 - -0.2 2,898,900 - +0.2 2,898,900 - +0.4 2,898,900 - -0.3 2,898,900 - +0.5 2,898,900 - -0.4 2,898,900 - -0.1 2,899,107 - HP15_2748 0.12 +0.3 2,899,133 + HP15_2748 0.15 -0.4 2,899,245 - HP15_2748 0.28 -2.5 2,899,254 + HP15_2748 0.29 +0.7 2,899,609 + HP15_2748 0.68 -0.0 2,899,609 - HP15_2748 0.68 -0.4 2,899,703 - HP15_2748 0.79 -2.0 2,899,826 + +0.1 2,899,834 - -3.9
Or see this region's nucleotide sequence