Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2651 and HP15_2652 are separated by 105 nucleotides HP15_2652 and HP15_2653 overlap by 14 nucleotides HP15_2653 and HP15_2654 are separated by 84 nucleotides HP15_2654 and HP15_2655 overlap by 24 nucleotides
HP15_2651: HP15_2651 - NADH:flavin oxidoreductase/NADH oxidase, at 2,800,911 to 2,802,011
_2651
HP15_2652: HP15_2652 - zinc/iron permease, at 2,802,117 to 2,802,902
_2652
HP15_2653: HP15_2653 - transcriptional regulator, LysR family protein, at 2,802,889 to 2,803,797
_2653
HP15_2654: HP15_2654 - hypothetical protein, at 2,803,882 to 2,804,007
_2654
HP15_2655: HP15_2655 - methylmalonate-semialdehyde dehydrogenase, at 2,803,984 to 2,805,495
_2655
Position (kb)
2802
2803
2804 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2802.223 kb on + strand, within HP15_2652 at 2802.395 kb on - strand, within HP15_2652 at 2802.490 kb on + strand, within HP15_2652 at 2802.588 kb on + strand, within HP15_2652 at 2802.707 kb on + strand, within HP15_2652 at 2802.899 kb on - strand at 2802.924 kb on - strand at 2803.082 kb on + strand, within HP15_2653 at 2803.090 kb on - strand, within HP15_2653 at 2803.092 kb on + strand, within HP15_2653 at 2803.107 kb on + strand, within HP15_2653 at 2803.130 kb on - strand, within HP15_2653 at 2803.160 kb on - strand, within HP15_2653 at 2803.163 kb on + strand, within HP15_2653 at 2803.171 kb on - strand, within HP15_2653 at 2803.185 kb on - strand, within HP15_2653 at 2803.294 kb on + strand, within HP15_2653 at 2803.382 kb on + strand, within HP15_2653 at 2803.382 kb on + strand, within HP15_2653 at 2803.382 kb on + strand, within HP15_2653 at 2803.390 kb on - strand, within HP15_2653 at 2803.390 kb on - strand, within HP15_2653 at 2803.392 kb on + strand, within HP15_2653 at 2803.409 kb on + strand, within HP15_2653 at 2803.415 kb on + strand, within HP15_2653 at 2803.460 kb on - strand, within HP15_2653 at 2803.462 kb on + strand, within HP15_2653 at 2803.635 kb on - strand, within HP15_2653 at 2803.788 kb on - strand at 2804.236 kb on - strand, within HP15_2655 at 2804.370 kb on - strand, within HP15_2655 at 2804.495 kb on + strand, within HP15_2655 at 2804.495 kb on + strand, within HP15_2655 at 2804.508 kb on - strand, within HP15_2655 at 2804.775 kb on + strand, within HP15_2655
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 2,802,223 + HP15_2652 0.13 +2.1 2,802,395 - HP15_2652 0.35 -4.3 2,802,490 + HP15_2652 0.47 -0.7 2,802,588 + HP15_2652 0.60 -0.1 2,802,707 + HP15_2652 0.75 -0.4 2,802,899 - -0.1 2,802,924 - +0.4 2,803,082 + HP15_2653 0.21 -2.7 2,803,090 - HP15_2653 0.22 +1.8 2,803,092 + HP15_2653 0.22 +0.9 2,803,107 + HP15_2653 0.24 +0.2 2,803,130 - HP15_2653 0.27 +0.6 2,803,160 - HP15_2653 0.30 +1.1 2,803,163 + HP15_2653 0.30 +1.1 2,803,171 - HP15_2653 0.31 -0.3 2,803,185 - HP15_2653 0.33 +0.3 2,803,294 + HP15_2653 0.45 +0.4 2,803,382 + HP15_2653 0.54 +0.4 2,803,382 + HP15_2653 0.54 +0.1 2,803,382 + HP15_2653 0.54 +1.1 2,803,390 - HP15_2653 0.55 +0.1 2,803,390 - HP15_2653 0.55 -2.5 2,803,392 + HP15_2653 0.55 +0.3 2,803,409 + HP15_2653 0.57 +0.3 2,803,415 + HP15_2653 0.58 +0.0 2,803,460 - HP15_2653 0.63 +0.9 2,803,462 + HP15_2653 0.63 +0.4 2,803,635 - HP15_2653 0.82 +0.2 2,803,788 - +0.3 2,804,236 - HP15_2655 0.17 -0.1 2,804,370 - HP15_2655 0.26 +0.5 2,804,495 + HP15_2655 0.34 +0.3 2,804,495 + HP15_2655 0.34 -1.7 2,804,508 - HP15_2655 0.35 +0.5 2,804,775 + HP15_2655 0.52 +0.4
Or see this region's nucleotide sequence