Strain Fitness in Marinobacter adhaerens HP15 around HP15_2653

Experiment: Control growth in Pro99_seawater

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2651 and HP15_2652 are separated by 105 nucleotidesHP15_2652 and HP15_2653 overlap by 14 nucleotidesHP15_2653 and HP15_2654 are separated by 84 nucleotidesHP15_2654 and HP15_2655 overlap by 24 nucleotides HP15_2651: HP15_2651 - NADH:flavin oxidoreductase/NADH oxidase, at 2,800,911 to 2,802,011 _2651 HP15_2652: HP15_2652 - zinc/iron permease, at 2,802,117 to 2,802,902 _2652 HP15_2653: HP15_2653 - transcriptional regulator, LysR family protein, at 2,802,889 to 2,803,797 _2653 HP15_2654: HP15_2654 - hypothetical protein, at 2,803,882 to 2,804,007 _2654 HP15_2655: HP15_2655 - methylmalonate-semialdehyde dehydrogenase, at 2,803,984 to 2,805,495 _2655 Position (kb) 2802 2803 2804Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2802.223 kb on + strand, within HP15_2652at 2802.395 kb on - strand, within HP15_2652at 2802.490 kb on + strand, within HP15_2652at 2802.588 kb on + strand, within HP15_2652at 2802.707 kb on + strand, within HP15_2652at 2802.899 kb on - strandat 2802.924 kb on - strandat 2803.082 kb on + strand, within HP15_2653at 2803.090 kb on - strand, within HP15_2653at 2803.092 kb on + strand, within HP15_2653at 2803.107 kb on + strand, within HP15_2653at 2803.130 kb on - strand, within HP15_2653at 2803.160 kb on - strand, within HP15_2653at 2803.163 kb on + strand, within HP15_2653at 2803.171 kb on - strand, within HP15_2653at 2803.185 kb on - strand, within HP15_2653at 2803.294 kb on + strand, within HP15_2653at 2803.382 kb on + strand, within HP15_2653at 2803.382 kb on + strand, within HP15_2653at 2803.382 kb on + strand, within HP15_2653at 2803.390 kb on - strand, within HP15_2653at 2803.390 kb on - strand, within HP15_2653at 2803.392 kb on + strand, within HP15_2653at 2803.409 kb on + strand, within HP15_2653at 2803.415 kb on + strand, within HP15_2653at 2803.460 kb on - strand, within HP15_2653at 2803.462 kb on + strand, within HP15_2653at 2803.635 kb on - strand, within HP15_2653at 2803.788 kb on - strandat 2804.236 kb on - strand, within HP15_2655at 2804.370 kb on - strand, within HP15_2655at 2804.495 kb on + strand, within HP15_2655at 2804.495 kb on + strand, within HP15_2655at 2804.508 kb on - strand, within HP15_2655at 2804.775 kb on + strand, within HP15_2655

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Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
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2,802,223 + HP15_2652 0.13 +2.1
2,802,395 - HP15_2652 0.35 -4.3
2,802,490 + HP15_2652 0.47 -0.7
2,802,588 + HP15_2652 0.60 -0.1
2,802,707 + HP15_2652 0.75 -0.4
2,802,899 - -0.1
2,802,924 - +0.4
2,803,082 + HP15_2653 0.21 -2.7
2,803,090 - HP15_2653 0.22 +1.8
2,803,092 + HP15_2653 0.22 +0.9
2,803,107 + HP15_2653 0.24 +0.2
2,803,130 - HP15_2653 0.27 +0.6
2,803,160 - HP15_2653 0.30 +1.1
2,803,163 + HP15_2653 0.30 +1.1
2,803,171 - HP15_2653 0.31 -0.3
2,803,185 - HP15_2653 0.33 +0.3
2,803,294 + HP15_2653 0.45 +0.4
2,803,382 + HP15_2653 0.54 +0.4
2,803,382 + HP15_2653 0.54 +0.1
2,803,382 + HP15_2653 0.54 +1.1
2,803,390 - HP15_2653 0.55 +0.1
2,803,390 - HP15_2653 0.55 -2.5
2,803,392 + HP15_2653 0.55 +0.3
2,803,409 + HP15_2653 0.57 +0.3
2,803,415 + HP15_2653 0.58 +0.0
2,803,460 - HP15_2653 0.63 +0.9
2,803,462 + HP15_2653 0.63 +0.4
2,803,635 - HP15_2653 0.82 +0.2
2,803,788 - +0.3
2,804,236 - HP15_2655 0.17 -0.1
2,804,370 - HP15_2655 0.26 +0.5
2,804,495 + HP15_2655 0.34 +0.3
2,804,495 + HP15_2655 0.34 -1.7
2,804,508 - HP15_2655 0.35 +0.5
2,804,775 + HP15_2655 0.52 +0.4

Or see this region's nucleotide sequence