Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2606 and HP15_2607 are separated by 2 nucleotides HP15_2607 and HP15_2608 are separated by 1 nucleotides HP15_2608 and HP15_2609 are separated by 10 nucleotides
HP15_2606: HP15_2606 - transporter, at 2,756,933 to 2,759,323
_2606
HP15_2607: HP15_2607 - BNR repeat glycosyl hydrolase-like protein, at 2,759,326 to 2,760,303
_2607
HP15_2608: HP15_2608 - hydroxymethylglutaryl-CoA lyase, at 2,760,305 to 2,761,228
_2608
HP15_2609: HP15_2609 - acyl-CoA transferase/carnitine dehydratase, at 2,761,239 to 2,762,435
_2609
Position (kb)
2759
2760
2761 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2758.338 kb on + strand, within HP15_2606 at 2758.373 kb on + strand, within HP15_2606 at 2758.461 kb on - strand, within HP15_2606 at 2758.470 kb on + strand, within HP15_2606 at 2758.478 kb on - strand, within HP15_2606 at 2758.527 kb on - strand, within HP15_2606 at 2758.593 kb on + strand, within HP15_2606 at 2758.637 kb on + strand, within HP15_2606 at 2758.751 kb on + strand, within HP15_2606 at 2758.760 kb on - strand, within HP15_2606 at 2758.760 kb on - strand, within HP15_2606 at 2758.836 kb on - strand, within HP15_2606 at 2759.008 kb on + strand, within HP15_2606 at 2759.033 kb on + strand, within HP15_2606 at 2759.070 kb on - strand, within HP15_2606 at 2759.252 kb on + strand at 2759.332 kb on - strand at 2759.414 kb on - strand at 2759.425 kb on + strand, within HP15_2607 at 2759.431 kb on - strand, within HP15_2607 at 2759.697 kb on + strand, within HP15_2607 at 2759.728 kb on - strand, within HP15_2607 at 2759.810 kb on - strand, within HP15_2607 at 2759.911 kb on - strand, within HP15_2607 at 2759.999 kb on + strand, within HP15_2607 at 2760.087 kb on + strand, within HP15_2607 at 2760.095 kb on - strand, within HP15_2607 at 2760.134 kb on + strand, within HP15_2607 at 2760.172 kb on + strand, within HP15_2607 at 2760.224 kb on - strand at 2760.245 kb on + strand at 2760.258 kb on - strand at 2760.324 kb on + strand at 2760.337 kb on - strand at 2760.454 kb on - strand, within HP15_2608 at 2760.482 kb on - strand, within HP15_2608 at 2760.662 kb on + strand, within HP15_2608 at 2760.670 kb on - strand, within HP15_2608 at 2760.670 kb on - strand, within HP15_2608 at 2760.677 kb on + strand, within HP15_2608 at 2760.737 kb on - strand, within HP15_2608 at 2760.742 kb on - strand, within HP15_2608 at 2760.837 kb on - strand, within HP15_2608 at 2760.882 kb on - strand, within HP15_2608 at 2760.894 kb on - strand, within HP15_2608 at 2760.952 kb on + strand, within HP15_2608 at 2760.998 kb on + strand, within HP15_2608 at 2761.003 kb on + strand, within HP15_2608 at 2761.006 kb on - strand, within HP15_2608 at 2761.011 kb on - strand, within HP15_2608 at 2761.192 kb on - strand at 2761.243 kb on + strand at 2761.266 kb on - strand at 2761.299 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 2,758,338 + HP15_2606 0.59 -2.1 2,758,373 + HP15_2606 0.60 -2.3 2,758,461 - HP15_2606 0.64 +0.2 2,758,470 + HP15_2606 0.64 +0.3 2,758,478 - HP15_2606 0.65 -0.5 2,758,527 - HP15_2606 0.67 +0.2 2,758,593 + HP15_2606 0.69 -2.4 2,758,637 + HP15_2606 0.71 +0.6 2,758,751 + HP15_2606 0.76 -0.2 2,758,760 - HP15_2606 0.76 +1.2 2,758,760 - HP15_2606 0.76 -2.5 2,758,836 - HP15_2606 0.80 -0.7 2,759,008 + HP15_2606 0.87 +1.6 2,759,033 + HP15_2606 0.88 +0.0 2,759,070 - HP15_2606 0.89 +0.7 2,759,252 + -0.3 2,759,332 - +0.3 2,759,414 - +0.2 2,759,425 + HP15_2607 0.10 +0.9 2,759,431 - HP15_2607 0.11 +1.3 2,759,697 + HP15_2607 0.38 +0.7 2,759,728 - HP15_2607 0.41 +0.2 2,759,810 - HP15_2607 0.49 -0.3 2,759,911 - HP15_2607 0.60 -2.7 2,759,999 + HP15_2607 0.69 -0.2 2,760,087 + HP15_2607 0.78 +0.1 2,760,095 - HP15_2607 0.79 -2.7 2,760,134 + HP15_2607 0.83 +0.9 2,760,172 + HP15_2607 0.87 +0.6 2,760,224 - -2.6 2,760,245 + +0.4 2,760,258 - -3.1 2,760,324 + +0.2 2,760,337 - +0.0 2,760,454 - HP15_2608 0.16 +0.4 2,760,482 - HP15_2608 0.19 -0.1 2,760,662 + HP15_2608 0.39 -2.1 2,760,670 - HP15_2608 0.40 +0.7 2,760,670 - HP15_2608 0.40 -0.4 2,760,677 + HP15_2608 0.40 +0.6 2,760,737 - HP15_2608 0.47 +0.6 2,760,742 - HP15_2608 0.47 -2.2 2,760,837 - HP15_2608 0.58 +0.4 2,760,882 - HP15_2608 0.62 -2.3 2,760,894 - HP15_2608 0.64 +2.7 2,760,952 + HP15_2608 0.70 -2.4 2,760,998 + HP15_2608 0.75 +1.0 2,761,003 + HP15_2608 0.76 +0.1 2,761,006 - HP15_2608 0.76 -0.4 2,761,011 - HP15_2608 0.76 +0.5 2,761,192 - -2.5 2,761,243 + -0.3 2,761,266 - +0.4 2,761,299 + -2.2
Or see this region's nucleotide sequence