Strain Fitness in Marinobacter adhaerens HP15 around HP15_2607

Experiment: Control growth in Pro99_seawater

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2606 and HP15_2607 are separated by 2 nucleotidesHP15_2607 and HP15_2608 are separated by 1 nucleotidesHP15_2608 and HP15_2609 are separated by 10 nucleotides HP15_2606: HP15_2606 - transporter, at 2,756,933 to 2,759,323 _2606 HP15_2607: HP15_2607 - BNR repeat glycosyl hydrolase-like protein, at 2,759,326 to 2,760,303 _2607 HP15_2608: HP15_2608 - hydroxymethylglutaryl-CoA lyase, at 2,760,305 to 2,761,228 _2608 HP15_2609: HP15_2609 - acyl-CoA transferase/carnitine dehydratase, at 2,761,239 to 2,762,435 _2609 Position (kb) 2759 2760 2761Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2758.338 kb on + strand, within HP15_2606at 2758.373 kb on + strand, within HP15_2606at 2758.461 kb on - strand, within HP15_2606at 2758.470 kb on + strand, within HP15_2606at 2758.478 kb on - strand, within HP15_2606at 2758.527 kb on - strand, within HP15_2606at 2758.593 kb on + strand, within HP15_2606at 2758.637 kb on + strand, within HP15_2606at 2758.751 kb on + strand, within HP15_2606at 2758.760 kb on - strand, within HP15_2606at 2758.760 kb on - strand, within HP15_2606at 2758.836 kb on - strand, within HP15_2606at 2759.008 kb on + strand, within HP15_2606at 2759.033 kb on + strand, within HP15_2606at 2759.070 kb on - strand, within HP15_2606at 2759.252 kb on + strandat 2759.332 kb on - strandat 2759.414 kb on - strandat 2759.425 kb on + strand, within HP15_2607at 2759.431 kb on - strand, within HP15_2607at 2759.697 kb on + strand, within HP15_2607at 2759.728 kb on - strand, within HP15_2607at 2759.810 kb on - strand, within HP15_2607at 2759.911 kb on - strand, within HP15_2607at 2759.999 kb on + strand, within HP15_2607at 2760.087 kb on + strand, within HP15_2607at 2760.095 kb on - strand, within HP15_2607at 2760.134 kb on + strand, within HP15_2607at 2760.172 kb on + strand, within HP15_2607at 2760.224 kb on - strandat 2760.245 kb on + strandat 2760.258 kb on - strandat 2760.324 kb on + strandat 2760.337 kb on - strandat 2760.454 kb on - strand, within HP15_2608at 2760.482 kb on - strand, within HP15_2608at 2760.662 kb on + strand, within HP15_2608at 2760.670 kb on - strand, within HP15_2608at 2760.670 kb on - strand, within HP15_2608at 2760.677 kb on + strand, within HP15_2608at 2760.737 kb on - strand, within HP15_2608at 2760.742 kb on - strand, within HP15_2608at 2760.837 kb on - strand, within HP15_2608at 2760.882 kb on - strand, within HP15_2608at 2760.894 kb on - strand, within HP15_2608at 2760.952 kb on + strand, within HP15_2608at 2760.998 kb on + strand, within HP15_2608at 2761.003 kb on + strand, within HP15_2608at 2761.006 kb on - strand, within HP15_2608at 2761.011 kb on - strand, within HP15_2608at 2761.192 kb on - strandat 2761.243 kb on + strandat 2761.266 kb on - strandat 2761.299 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
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2,758,338 + HP15_2606 0.59 -2.1
2,758,373 + HP15_2606 0.60 -2.3
2,758,461 - HP15_2606 0.64 +0.2
2,758,470 + HP15_2606 0.64 +0.3
2,758,478 - HP15_2606 0.65 -0.5
2,758,527 - HP15_2606 0.67 +0.2
2,758,593 + HP15_2606 0.69 -2.4
2,758,637 + HP15_2606 0.71 +0.6
2,758,751 + HP15_2606 0.76 -0.2
2,758,760 - HP15_2606 0.76 +1.2
2,758,760 - HP15_2606 0.76 -2.5
2,758,836 - HP15_2606 0.80 -0.7
2,759,008 + HP15_2606 0.87 +1.6
2,759,033 + HP15_2606 0.88 +0.0
2,759,070 - HP15_2606 0.89 +0.7
2,759,252 + -0.3
2,759,332 - +0.3
2,759,414 - +0.2
2,759,425 + HP15_2607 0.10 +0.9
2,759,431 - HP15_2607 0.11 +1.3
2,759,697 + HP15_2607 0.38 +0.7
2,759,728 - HP15_2607 0.41 +0.2
2,759,810 - HP15_2607 0.49 -0.3
2,759,911 - HP15_2607 0.60 -2.7
2,759,999 + HP15_2607 0.69 -0.2
2,760,087 + HP15_2607 0.78 +0.1
2,760,095 - HP15_2607 0.79 -2.7
2,760,134 + HP15_2607 0.83 +0.9
2,760,172 + HP15_2607 0.87 +0.6
2,760,224 - -2.6
2,760,245 + +0.4
2,760,258 - -3.1
2,760,324 + +0.2
2,760,337 - +0.0
2,760,454 - HP15_2608 0.16 +0.4
2,760,482 - HP15_2608 0.19 -0.1
2,760,662 + HP15_2608 0.39 -2.1
2,760,670 - HP15_2608 0.40 +0.7
2,760,670 - HP15_2608 0.40 -0.4
2,760,677 + HP15_2608 0.40 +0.6
2,760,737 - HP15_2608 0.47 +0.6
2,760,742 - HP15_2608 0.47 -2.2
2,760,837 - HP15_2608 0.58 +0.4
2,760,882 - HP15_2608 0.62 -2.3
2,760,894 - HP15_2608 0.64 +2.7
2,760,952 + HP15_2608 0.70 -2.4
2,760,998 + HP15_2608 0.75 +1.0
2,761,003 + HP15_2608 0.76 +0.1
2,761,006 - HP15_2608 0.76 -0.4
2,761,011 - HP15_2608 0.76 +0.5
2,761,192 - -2.5
2,761,243 + -0.3
2,761,266 - +0.4
2,761,299 + -2.2

Or see this region's nucleotide sequence