Strain Fitness in Marinobacter adhaerens HP15 around HP15_2605

Experiment: Control growth in Pro99_seawater

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2604 and HP15_2605 are separated by 67 nucleotidesHP15_2605 and HP15_2606 overlap by 1 nucleotides HP15_2604: HP15_2604 - protein containing DUF1329, at 2,753,978 to 2,755,195 _2604 HP15_2605: HP15_2605 - regulatory protein, LysR, at 2,755,263 to 2,756,933 _2605 HP15_2606: HP15_2606 - transporter, at 2,756,933 to 2,759,323 _2606 Position (kb) 2755 2756 2757Strain fitness (log2 ratio) -3 -2 -1 0 1at 2754.429 kb on + strand, within HP15_2604at 2754.437 kb on - strand, within HP15_2604at 2754.486 kb on + strand, within HP15_2604at 2754.881 kb on - strand, within HP15_2604at 2754.884 kb on + strand, within HP15_2604at 2754.892 kb on - strand, within HP15_2604at 2755.030 kb on - strand, within HP15_2604at 2755.117 kb on + strandat 2755.123 kb on + strandat 2755.131 kb on - strandat 2755.199 kb on - strandat 2755.206 kb on - strandat 2755.346 kb on - strandat 2755.346 kb on - strandat 2755.411 kb on + strandat 2755.455 kb on + strand, within HP15_2605at 2755.455 kb on + strand, within HP15_2605at 2755.463 kb on - strand, within HP15_2605at 2755.622 kb on + strand, within HP15_2605at 2755.707 kb on - strand, within HP15_2605at 2755.812 kb on - strand, within HP15_2605at 2755.822 kb on - strand, within HP15_2605at 2755.835 kb on - strand, within HP15_2605at 2755.841 kb on - strand, within HP15_2605at 2755.854 kb on - strand, within HP15_2605at 2755.942 kb on - strand, within HP15_2605at 2756.038 kb on - strand, within HP15_2605at 2756.056 kb on + strand, within HP15_2605at 2756.056 kb on + strand, within HP15_2605at 2756.107 kb on + strand, within HP15_2605at 2756.115 kb on - strand, within HP15_2605at 2756.156 kb on - strand, within HP15_2605at 2756.241 kb on + strand, within HP15_2605at 2756.433 kb on - strand, within HP15_2605at 2756.515 kb on - strand, within HP15_2605at 2756.515 kb on - strand, within HP15_2605at 2756.582 kb on + strand, within HP15_2605at 2756.665 kb on - strand, within HP15_2605at 2756.676 kb on + strand, within HP15_2605at 2756.694 kb on - strand, within HP15_2605at 2756.700 kb on + strand, within HP15_2605at 2756.749 kb on - strand, within HP15_2605at 2756.754 kb on + strand, within HP15_2605at 2756.826 kb on - strandat 2756.851 kb on + strandat 2756.854 kb on - strandat 2756.854 kb on - strandat 2756.859 kb on - strandat 2756.866 kb on - strandat 2756.956 kb on + strandat 2757.152 kb on + strandat 2757.286 kb on - strand, within HP15_2606at 2757.292 kb on - strand, within HP15_2606at 2757.296 kb on + strand, within HP15_2606at 2757.362 kb on + strand, within HP15_2606at 2757.374 kb on + strand, within HP15_2606at 2757.471 kb on + strand, within HP15_2606at 2757.676 kb on + strand, within HP15_2606at 2757.814 kb on + strand, within HP15_2606at 2757.883 kb on - strand, within HP15_2606at 2757.932 kb on + strand, within HP15_2606

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Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
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2,754,429 + HP15_2604 0.37 +0.1
2,754,437 - HP15_2604 0.38 -0.4
2,754,486 + HP15_2604 0.42 -3.3
2,754,881 - HP15_2604 0.74 +0.4
2,754,884 + HP15_2604 0.74 +0.4
2,754,892 - HP15_2604 0.75 -1.8
2,755,030 - HP15_2604 0.86 -2.5
2,755,117 + +0.7
2,755,123 + -0.0
2,755,131 - +0.4
2,755,199 - -2.1
2,755,206 - -1.4
2,755,346 - +0.5
2,755,346 - -0.5
2,755,411 + -0.7
2,755,455 + HP15_2605 0.11 -0.5
2,755,455 + HP15_2605 0.11 +0.2
2,755,463 - HP15_2605 0.12 -0.4
2,755,622 + HP15_2605 0.21 -0.2
2,755,707 - HP15_2605 0.27 +0.3
2,755,812 - HP15_2605 0.33 +0.5
2,755,822 - HP15_2605 0.33 +0.4
2,755,835 - HP15_2605 0.34 -0.0
2,755,841 - HP15_2605 0.35 -2.6
2,755,854 - HP15_2605 0.35 +0.1
2,755,942 - HP15_2605 0.41 -1.6
2,756,038 - HP15_2605 0.46 -0.1
2,756,056 + HP15_2605 0.47 +1.0
2,756,056 + HP15_2605 0.47 +0.8
2,756,107 + HP15_2605 0.51 -0.6
2,756,115 - HP15_2605 0.51 +0.7
2,756,156 - HP15_2605 0.53 +0.5
2,756,241 + HP15_2605 0.59 -0.2
2,756,433 - HP15_2605 0.70 +0.6
2,756,515 - HP15_2605 0.75 -1.6
2,756,515 - HP15_2605 0.75 +0.6
2,756,582 + HP15_2605 0.79 -1.9
2,756,665 - HP15_2605 0.84 -2.6
2,756,676 + HP15_2605 0.85 -0.3
2,756,694 - HP15_2605 0.86 +1.0
2,756,700 + HP15_2605 0.86 +0.2
2,756,749 - HP15_2605 0.89 -3.0
2,756,754 + HP15_2605 0.89 -2.3
2,756,826 - -3.7
2,756,851 + +0.4
2,756,854 - +0.2
2,756,854 - +1.3
2,756,859 - +0.3
2,756,866 - +0.3
2,756,956 + -3.6
2,757,152 + -2.2
2,757,286 - HP15_2606 0.15 +0.1
2,757,292 - HP15_2606 0.15 +0.6
2,757,296 + HP15_2606 0.15 +0.2
2,757,362 + HP15_2606 0.18 +0.2
2,757,374 + HP15_2606 0.18 +0.7
2,757,471 + HP15_2606 0.23 -0.5
2,757,676 + HP15_2606 0.31 -0.9
2,757,814 + HP15_2606 0.37 +0.8
2,757,883 - HP15_2606 0.40 -2.3
2,757,932 + HP15_2606 0.42 +0.5

Or see this region's nucleotide sequence