Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2584 and HP15_2585 overlap by 4 nucleotides HP15_2585 and HP15_2586 are separated by 41 nucleotides HP15_2586 and HP15_2587 are separated by 115 nucleotides HP15_2587 and HP15_2588 are separated by 41 nucleotides HP15_2588 and HP15_2589 are separated by 34 nucleotides HP15_2589 and HP15_2590 overlap by 4 nucleotides
HP15_2584: HP15_2584 - pH adaption potassium efflux system protein PhaE, at 2,735,382 to 2,735,870
_2584
HP15_2585: HP15_2585 - multiple resistance and pH regulation protein F, at 2,735,867 to 2,736,136
_2585
HP15_2586: HP15_2586 - monovalent cation/H+ antiporter subunit G, at 2,736,178 to 2,736,510
_2586
HP15_2587: HP15_2587 - monovalent cation/H+ antiporter subunit A, at 2,736,626 to 2,738,935
_2587
HP15_2588: HP15_2588 - Na+/H+ antiporter MnhB subunit-related protein, at 2,738,977 to 2,739,357
_2588
HP15_2589: HP15_2589 - NADH:ubiquinone/quinone oxidoreductase, chain 4L, at 2,739,392 to 2,739,739
_2589
HP15_2590: HP15_2590 - monovalent cation/H+ antiporter subunit D, at 2,739,736 to 2,741,250
_2590
Position (kb)
2736
2737
2738
2739 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2735.676 kb on - strand, within HP15_2584 at 2735.915 kb on - strand, within HP15_2585 at 2735.984 kb on + strand, within HP15_2585 at 2735.992 kb on - strand, within HP15_2585 at 2736.011 kb on + strand, within HP15_2585 at 2736.121 kb on - strand at 2736.131 kb on - strand at 2736.319 kb on - strand, within HP15_2586 at 2736.321 kb on - strand, within HP15_2586 at 2736.331 kb on + strand, within HP15_2586 at 2736.367 kb on - strand, within HP15_2586 at 2736.474 kb on - strand, within HP15_2586 at 2736.713 kb on + strand at 2736.713 kb on + strand at 2736.788 kb on + strand at 2736.857 kb on - strand, within HP15_2587 at 2736.862 kb on - strand, within HP15_2587 at 2736.891 kb on + strand, within HP15_2587 at 2736.891 kb on + strand, within HP15_2587 at 2737.122 kb on - strand, within HP15_2587 at 2737.183 kb on - strand, within HP15_2587 at 2737.272 kb on - strand, within HP15_2587 at 2737.369 kb on + strand, within HP15_2587 at 2737.377 kb on - strand, within HP15_2587 at 2737.511 kb on - strand, within HP15_2587 at 2737.540 kb on - strand, within HP15_2587 at 2737.546 kb on - strand, within HP15_2587 at 2737.624 kb on + strand, within HP15_2587 at 2737.624 kb on + strand, within HP15_2587 at 2737.624 kb on + strand, within HP15_2587 at 2737.624 kb on + strand, within HP15_2587 at 2737.624 kb on + strand, within HP15_2587 at 2737.630 kb on - strand, within HP15_2587 at 2737.632 kb on - strand, within HP15_2587 at 2737.632 kb on - strand, within HP15_2587 at 2737.632 kb on - strand, within HP15_2587 at 2737.632 kb on - strand, within HP15_2587 at 2737.923 kb on - strand, within HP15_2587 at 2737.943 kb on - strand, within HP15_2587 at 2737.943 kb on - strand, within HP15_2587 at 2737.943 kb on - strand, within HP15_2587 at 2737.943 kb on - strand, within HP15_2587 at 2738.057 kb on + strand, within HP15_2587 at 2738.098 kb on - strand, within HP15_2587 at 2738.098 kb on - strand, within HP15_2587 at 2738.186 kb on + strand, within HP15_2587 at 2738.528 kb on - strand, within HP15_2587 at 2738.590 kb on + strand, within HP15_2587 at 2738.600 kb on - strand, within HP15_2587 at 2738.744 kb on - strand at 2738.781 kb on + strand at 2738.786 kb on + strand at 2738.794 kb on - strand at 2738.847 kb on - strand at 2738.867 kb on - strand at 2738.915 kb on + strand at 2739.050 kb on + strand, within HP15_2588 at 2739.076 kb on - strand, within HP15_2588 at 2739.207 kb on - strand, within HP15_2588 at 2739.207 kb on - strand, within HP15_2588 at 2739.232 kb on + strand, within HP15_2588 at 2739.254 kb on + strand, within HP15_2588 at 2739.302 kb on - strand, within HP15_2588 at 2739.316 kb on + strand, within HP15_2588 at 2739.406 kb on + strand at 2739.422 kb on - strand at 2739.499 kb on - strand, within HP15_2589 at 2739.615 kb on + strand, within HP15_2589 at 2739.676 kb on - strand, within HP15_2589 at 2739.699 kb on + strand, within HP15_2589 at 2739.792 kb on - strand at 2739.921 kb on + strand, within HP15_2590
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 2,735,676 - HP15_2584 0.60 -0.6 2,735,915 - HP15_2585 0.18 -1.5 2,735,984 + HP15_2585 0.43 -1.7 2,735,992 - HP15_2585 0.46 -1.8 2,736,011 + HP15_2585 0.53 -1.7 2,736,121 - -0.7 2,736,131 - -1.4 2,736,319 - HP15_2586 0.42 -0.3 2,736,321 - HP15_2586 0.43 -1.5 2,736,331 + HP15_2586 0.46 +1.3 2,736,367 - HP15_2586 0.57 -1.7 2,736,474 - HP15_2586 0.89 +0.4 2,736,713 + +0.6 2,736,713 + -0.4 2,736,788 + -0.0 2,736,857 - HP15_2587 0.10 +0.1 2,736,862 - HP15_2587 0.10 +1.5 2,736,891 + HP15_2587 0.11 -4.0 2,736,891 + HP15_2587 0.11 -0.1 2,737,122 - HP15_2587 0.21 -1.4 2,737,183 - HP15_2587 0.24 -0.2 2,737,272 - HP15_2587 0.28 +0.5 2,737,369 + HP15_2587 0.32 -2.0 2,737,377 - HP15_2587 0.33 -0.2 2,737,511 - HP15_2587 0.38 +0.3 2,737,540 - HP15_2587 0.40 +2.4 2,737,546 - HP15_2587 0.40 +0.7 2,737,624 + HP15_2587 0.43 +1.2 2,737,624 + HP15_2587 0.43 +1.3 2,737,624 + HP15_2587 0.43 -1.7 2,737,624 + HP15_2587 0.43 +0.7 2,737,624 + HP15_2587 0.43 +0.4 2,737,630 - HP15_2587 0.43 -4.4 2,737,632 - HP15_2587 0.44 +0.3 2,737,632 - HP15_2587 0.44 +0.3 2,737,632 - HP15_2587 0.44 -2.5 2,737,632 - HP15_2587 0.44 +0.8 2,737,923 - HP15_2587 0.56 -1.0 2,737,943 - HP15_2587 0.57 -3.3 2,737,943 - HP15_2587 0.57 -0.1 2,737,943 - HP15_2587 0.57 +0.1 2,737,943 - HP15_2587 0.57 -2.5 2,738,057 + HP15_2587 0.62 -3.3 2,738,098 - HP15_2587 0.64 -0.1 2,738,098 - HP15_2587 0.64 +2.2 2,738,186 + HP15_2587 0.68 -2.3 2,738,528 - HP15_2587 0.82 +0.9 2,738,590 + HP15_2587 0.85 +0.9 2,738,600 - HP15_2587 0.85 +0.2 2,738,744 - +0.0 2,738,781 + -2.6 2,738,786 + +0.6 2,738,794 - -2.3 2,738,847 - -0.2 2,738,867 - -0.6 2,738,915 + +1.0 2,739,050 + HP15_2588 0.19 -2.6 2,739,076 - HP15_2588 0.26 -2.6 2,739,207 - HP15_2588 0.60 +0.7 2,739,207 - HP15_2588 0.60 -0.7 2,739,232 + HP15_2588 0.67 +0.1 2,739,254 + HP15_2588 0.73 +0.1 2,739,302 - HP15_2588 0.85 -0.2 2,739,316 + HP15_2588 0.89 -0.1 2,739,406 + +0.6 2,739,422 - +0.6 2,739,499 - HP15_2589 0.31 +0.0 2,739,615 + HP15_2589 0.64 -2.9 2,739,676 - HP15_2589 0.82 +0.5 2,739,699 + HP15_2589 0.88 +0.2 2,739,792 - +0.1 2,739,921 + HP15_2590 0.12 +1.4
Or see this region's nucleotide sequence