Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2430 and HP15_2431 are separated by 28 nucleotides HP15_2431 and HP15_2432 are separated by 104 nucleotides HP15_2432 and HP15_2433 overlap by 4 nucleotides HP15_2433 and HP15_2434 overlap by 4 nucleotides
HP15_2430: HP15_2430 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 2,571,451 to 2,572,713
_2430
HP15_2431: HP15_2431 - transcriptional regulator, BolA superfamily protein, at 2,572,742 to 2,572,984
_2431
HP15_2432: HP15_2432 - NTP binding protein (contains STAS domain), at 2,573,089 to 2,573,421
_2432
HP15_2433: HP15_2433 - toluene tolerance family protein, at 2,573,418 to 2,574,107
_2433
HP15_2434: HP15_2434 - mammalian cell entry related domain protein, at 2,574,104 to 2,574,553
_2434
Position (kb)
2573
2574 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2573.056 kb on - strand at 2573.247 kb on + strand, within HP15_2432 at 2573.247 kb on + strand, within HP15_2432 at 2573.247 kb on + strand, within HP15_2432 at 2573.262 kb on - strand, within HP15_2432 at 2573.452 kb on - strand at 2573.601 kb on + strand, within HP15_2433 at 2573.607 kb on - strand, within HP15_2433 at 2573.607 kb on - strand, within HP15_2433 at 2574.157 kb on - strand, within HP15_2434 at 2574.179 kb on - strand, within HP15_2434 at 2574.238 kb on + strand, within HP15_2434 at 2574.256 kb on - strand, within HP15_2434 at 2574.274 kb on - strand, within HP15_2434 at 2574.361 kb on + strand, within HP15_2434 at 2574.369 kb on - strand, within HP15_2434 at 2574.369 kb on - strand, within HP15_2434
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 2,573,056 - -0.9 2,573,247 + HP15_2432 0.47 -1.4 2,573,247 + HP15_2432 0.47 +0.0 2,573,247 + HP15_2432 0.47 -1.5 2,573,262 - HP15_2432 0.52 -2.2 2,573,452 - -0.2 2,573,601 + HP15_2433 0.27 -1.9 2,573,607 - HP15_2433 0.27 -0.0 2,573,607 - HP15_2433 0.27 -1.2 2,574,157 - HP15_2434 0.12 +0.2 2,574,179 - HP15_2434 0.17 -2.8 2,574,238 + HP15_2434 0.30 +0.4 2,574,256 - HP15_2434 0.34 -2.7 2,574,274 - HP15_2434 0.38 +0.7 2,574,361 + HP15_2434 0.57 +0.9 2,574,369 - HP15_2434 0.59 +0.5 2,574,369 - HP15_2434 0.59 -2.1
Or see this region's nucleotide sequence