Strain Fitness in Marinobacter adhaerens HP15 around HP15_2429

Experiment: Control growth in Pro99_seawater

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2428 and HP15_2429 are separated by 53 nucleotidesHP15_2429 and HP15_2430 are separated by 40 nucleotides HP15_2428: HP15_2428 - histidinol dehydrogenase, at 2,569,411 to 2,570,715 _2428 HP15_2429: HP15_2429 - ATP phosphoribosyltransferase (EC 2.4.2.17) (from data), at 2,570,769 to 2,571,410 _2429 HP15_2430: HP15_2430 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 2,571,451 to 2,572,713 _2430 Position (kb) 2570 2571 2572Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2570.182 kb on + strand, within HP15_2428at 2570.329 kb on + strand, within HP15_2428at 2570.329 kb on + strand, within HP15_2428at 2570.329 kb on + strand, within HP15_2428at 2570.728 kb on + strandat 2570.773 kb on - strandat 2570.981 kb on + strand, within HP15_2429at 2571.018 kb on + strand, within HP15_2429at 2571.018 kb on + strand, within HP15_2429at 2571.018 kb on + strand, within HP15_2429at 2571.026 kb on - strand, within HP15_2429at 2571.160 kb on - strand, within HP15_2429at 2571.200 kb on + strand, within HP15_2429at 2571.214 kb on + strand, within HP15_2429at 2571.214 kb on - strand, within HP15_2429

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Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
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2,570,182 + HP15_2428 0.59 -5.3
2,570,329 + HP15_2428 0.70 +0.8
2,570,329 + HP15_2428 0.70 -2.7
2,570,329 + HP15_2428 0.70 -5.3
2,570,728 + -1.0
2,570,773 - -0.0
2,570,981 + HP15_2429 0.33 -3.3
2,571,018 + HP15_2429 0.39 -3.5
2,571,018 + HP15_2429 0.39 -5.8
2,571,018 + HP15_2429 0.39 -5.1
2,571,026 - HP15_2429 0.40 -4.2
2,571,160 - HP15_2429 0.61 -4.1
2,571,200 + HP15_2429 0.67 -2.8
2,571,214 + HP15_2429 0.69 -3.1
2,571,214 - HP15_2429 0.69 -4.9

Or see this region's nucleotide sequence