Strain Fitness in Marinobacter adhaerens HP15 around HP15_2369

Experiment: Control growth in Pro99_seawater

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2367 and HP15_2368 are separated by 150 nucleotidesHP15_2368 and HP15_2369 are separated by 36 nucleotidesHP15_2369 and HP15_2370 are separated by 247 nucleotidesHP15_2370 and HP15_2371 are separated by 70 nucleotides HP15_2367: HP15_2367 - argininosuccinate synthase, at 2,492,385 to 2,493,611 _2367 HP15_2368: HP15_2368 - flagellar protein FliS, at 2,493,762 to 2,494,160 _2368 HP15_2369: HP15_2369 - flagellar hook-associated 2 domain protein, at 2,494,197 to 2,496,185 _2369 HP15_2370: HP15_2370 - flagellar protein FlaG protein, at 2,496,433 to 2,496,867 _2370 HP15_2371: HP15_2371 - flagellin FliC, at 2,496,938 to 2,498,782 _2371 Position (kb) 2494 2495 2496 2497Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2493.600 kb on - strandat 2493.693 kb on - strandat 2493.726 kb on + strandat 2493.726 kb on + strandat 2493.831 kb on - strand, within HP15_2368at 2493.835 kb on + strand, within HP15_2368at 2493.934 kb on + strand, within HP15_2368at 2494.029 kb on - strand, within HP15_2368at 2494.041 kb on - strand, within HP15_2368at 2494.069 kb on + strand, within HP15_2368at 2494.080 kb on - strand, within HP15_2368at 2494.146 kb on - strandat 2494.153 kb on - strandat 2494.212 kb on + strandat 2494.254 kb on - strandat 2494.259 kb on - strandat 2494.379 kb on + strandat 2494.615 kb on - strand, within HP15_2369at 2494.713 kb on - strand, within HP15_2369at 2494.806 kb on + strand, within HP15_2369at 2494.820 kb on - strand, within HP15_2369at 2494.831 kb on - strand, within HP15_2369at 2494.952 kb on + strand, within HP15_2369at 2494.955 kb on - strand, within HP15_2369at 2494.999 kb on - strand, within HP15_2369at 2495.017 kb on + strand, within HP15_2369at 2495.083 kb on + strand, within HP15_2369at 2495.083 kb on + strand, within HP15_2369at 2495.083 kb on + strand, within HP15_2369at 2495.091 kb on - strand, within HP15_2369at 2495.091 kb on - strand, within HP15_2369at 2495.091 kb on - strand, within HP15_2369at 2495.091 kb on - strand, within HP15_2369at 2495.096 kb on + strand, within HP15_2369at 2495.139 kb on - strand, within HP15_2369at 2495.174 kb on - strand, within HP15_2369at 2495.205 kb on + strand, within HP15_2369at 2495.221 kb on + strand, within HP15_2369at 2495.262 kb on - strand, within HP15_2369at 2495.357 kb on - strand, within HP15_2369at 2495.638 kb on + strand, within HP15_2369at 2495.733 kb on + strand, within HP15_2369at 2495.735 kb on + strand, within HP15_2369at 2495.741 kb on - strand, within HP15_2369at 2495.795 kb on + strand, within HP15_2369at 2495.795 kb on + strand, within HP15_2369at 2495.795 kb on + strand, within HP15_2369at 2495.800 kb on + strand, within HP15_2369at 2495.803 kb on - strand, within HP15_2369at 2495.803 kb on - strand, within HP15_2369at 2495.813 kb on - strand, within HP15_2369at 2495.824 kb on - strand, within HP15_2369at 2495.888 kb on - strand, within HP15_2369at 2495.968 kb on + strand, within HP15_2369at 2495.976 kb on - strand, within HP15_2369at 2495.994 kb on - strandat 2496.028 kb on + strandat 2496.036 kb on - strandat 2496.076 kb on - strandat 2496.141 kb on + strandat 2496.190 kb on - strandat 2496.190 kb on - strandat 2496.429 kb on - strandat 2496.431 kb on + strandat 2496.439 kb on - strandat 2496.689 kb on + strand, within HP15_2370at 2496.697 kb on - strand, within HP15_2370at 2496.697 kb on - strand, within HP15_2370at 2496.699 kb on + strand, within HP15_2370at 2496.707 kb on - strand, within HP15_2370at 2496.767 kb on + strand, within HP15_2370at 2496.837 kb on + strandat 2496.845 kb on - strandat 2496.847 kb on + strandat 2496.852 kb on + strandat 2496.852 kb on + strandat 2496.883 kb on + strandat 2496.891 kb on - strandat 2496.915 kb on + strandat 2496.921 kb on - strandat 2496.941 kb on + strandat 2496.949 kb on - strandat 2497.020 kb on + strandat 2497.093 kb on + strandat 2497.096 kb on - strandat 2497.106 kb on - strandat 2497.133 kb on + strand, within HP15_2371at 2497.141 kb on - strand, within HP15_2371at 2497.141 kb on - strand, within HP15_2371at 2497.178 kb on - strand, within HP15_2371

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Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
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2,493,600 - -1.0
2,493,693 - -2.2
2,493,726 + +0.9
2,493,726 + -3.2
2,493,831 - HP15_2368 0.17 -1.7
2,493,835 + HP15_2368 0.18 -2.9
2,493,934 + HP15_2368 0.43 -1.8
2,494,029 - HP15_2368 0.67 -2.7
2,494,041 - HP15_2368 0.70 -2.6
2,494,069 + HP15_2368 0.77 -0.5
2,494,080 - HP15_2368 0.80 -2.8
2,494,146 - -0.7
2,494,153 - -2.1
2,494,212 + -1.8
2,494,254 - -1.4
2,494,259 - -3.4
2,494,379 + -3.9
2,494,615 - HP15_2369 0.21 -2.0
2,494,713 - HP15_2369 0.26 -3.4
2,494,806 + HP15_2369 0.31 -0.5
2,494,820 - HP15_2369 0.31 -0.9
2,494,831 - HP15_2369 0.32 -3.1
2,494,952 + HP15_2369 0.38 -1.5
2,494,955 - HP15_2369 0.38 -0.7
2,494,999 - HP15_2369 0.40 -2.7
2,495,017 + HP15_2369 0.41 -1.9
2,495,083 + HP15_2369 0.45 -0.7
2,495,083 + HP15_2369 0.45 -2.0
2,495,083 + HP15_2369 0.45 -2.6
2,495,091 - HP15_2369 0.45 -0.5
2,495,091 - HP15_2369 0.45 -2.6
2,495,091 - HP15_2369 0.45 -4.1
2,495,091 - HP15_2369 0.45 -2.3
2,495,096 + HP15_2369 0.45 -0.9
2,495,139 - HP15_2369 0.47 -0.9
2,495,174 - HP15_2369 0.49 -0.5
2,495,205 + HP15_2369 0.51 +0.9
2,495,221 + HP15_2369 0.51 -1.6
2,495,262 - HP15_2369 0.54 -2.3
2,495,357 - HP15_2369 0.58 -1.6
2,495,638 + HP15_2369 0.72 -2.0
2,495,733 + HP15_2369 0.77 -3.6
2,495,735 + HP15_2369 0.77 -2.2
2,495,741 - HP15_2369 0.78 -3.3
2,495,795 + HP15_2369 0.80 -2.4
2,495,795 + HP15_2369 0.80 -2.6
2,495,795 + HP15_2369 0.80 -2.4
2,495,800 + HP15_2369 0.81 -1.4
2,495,803 - HP15_2369 0.81 -2.6
2,495,803 - HP15_2369 0.81 -3.6
2,495,813 - HP15_2369 0.81 -3.3
2,495,824 - HP15_2369 0.82 -2.3
2,495,888 - HP15_2369 0.85 +0.6
2,495,968 + HP15_2369 0.89 -1.8
2,495,976 - HP15_2369 0.89 -2.4
2,495,994 - -1.5
2,496,028 + -2.7
2,496,036 - -1.0
2,496,076 - -2.7
2,496,141 + -2.5
2,496,190 - +0.4
2,496,190 - -1.8
2,496,429 - +1.1
2,496,431 + -1.5
2,496,439 - -2.3
2,496,689 + HP15_2370 0.59 -2.8
2,496,697 - HP15_2370 0.61 +1.3
2,496,697 - HP15_2370 0.61 +0.5
2,496,699 + HP15_2370 0.61 +1.7
2,496,707 - HP15_2370 0.63 +0.5
2,496,767 + HP15_2370 0.77 -1.7
2,496,837 + +1.0
2,496,845 - -2.6
2,496,847 + -2.3
2,496,852 + -1.3
2,496,852 + -1.5
2,496,883 + -1.2
2,496,891 - +0.7
2,496,915 + -0.4
2,496,921 - +0.7
2,496,941 + +0.1
2,496,949 - -3.0
2,497,020 + -0.7
2,497,093 + -1.8
2,497,096 - -2.1
2,497,106 - +1.8
2,497,133 + HP15_2371 0.11 -1.2
2,497,141 - HP15_2371 0.11 -1.7
2,497,141 - HP15_2371 0.11 -2.5
2,497,178 - HP15_2371 0.13 -2.2

Or see this region's nucleotide sequence