Strain Fitness in Marinobacter adhaerens HP15 around HP15_2364

Experiment: Control growth in Pro99_seawater

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2363 and HP15_2364 are separated by 78 nucleotidesHP15_2364 and HP15_2365 are separated by 165 nucleotides HP15_2363: HP15_2363 - major facilitator superfamily MFS_1, at 2,488,083 to 2,489,420 _2363 HP15_2364: HP15_2364 - nucleotide-binding protein, at 2,489,499 to 2,489,981 _2364 HP15_2365: HP15_2365 - protein containing signal transduction response regulator, receiver region domain, at 2,490,147 to 2,491,064 _2365 Position (kb) 2489 2490Strain fitness (log2 ratio) -2 -1 0 1at 2489.625 kb on - strand, within HP15_2364at 2489.630 kb on - strand, within HP15_2364at 2490.062 kb on + strandat 2490.153 kb on - strandat 2490.266 kb on + strand, within HP15_2365at 2490.267 kb on - strand, within HP15_2365at 2490.294 kb on - strand, within HP15_2365at 2490.341 kb on - strand, within HP15_2365at 2490.343 kb on + strand, within HP15_2365at 2490.456 kb on - strand, within HP15_2365at 2490.511 kb on - strand, within HP15_2365at 2490.605 kb on + strand, within HP15_2365at 2490.648 kb on + strand, within HP15_2365at 2490.684 kb on - strand, within HP15_2365at 2490.716 kb on - strand, within HP15_2365at 2490.771 kb on + strand, within HP15_2365at 2490.771 kb on + strand, within HP15_2365at 2490.958 kb on - strand, within HP15_2365at 2490.972 kb on + strand, within HP15_2365

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
remove
2,489,625 - HP15_2364 0.26 +0.7
2,489,630 - HP15_2364 0.27 +0.8
2,490,062 + +0.6
2,490,153 - +0.2
2,490,266 + HP15_2365 0.13 +0.4
2,490,267 - HP15_2365 0.13 -2.7
2,490,294 - HP15_2365 0.16 +0.9
2,490,341 - HP15_2365 0.21 +0.2
2,490,343 + HP15_2365 0.21 +0.6
2,490,456 - HP15_2365 0.34 +0.4
2,490,511 - HP15_2365 0.40 -2.7
2,490,605 + HP15_2365 0.50 +0.6
2,490,648 + HP15_2365 0.55 +0.8
2,490,684 - HP15_2365 0.58 +0.6
2,490,716 - HP15_2365 0.62 -0.8
2,490,771 + HP15_2365 0.68 +1.0
2,490,771 + HP15_2365 0.68 +0.4
2,490,958 - HP15_2365 0.88 -2.3
2,490,972 + HP15_2365 0.90 +0.7

Or see this region's nucleotide sequence