Strain Fitness in Marinobacter adhaerens HP15 around HP15_2345

Experiment: Control growth in Pro99_seawater

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2344 and HP15_2345 are separated by 316 nucleotidesHP15_2345 and HP15_tRNA45 are separated by 41 nucleotidesHP15_tRNA45 and HP15_tRNA46 are separated by 18 nucleotidesHP15_tRNA46 and HP15_tRNA47 are separated by 67 nucleotidesHP15_tRNA47 and HP15_2346 are separated by 161 nucleotidesHP15_2346 and HP15_2347 are separated by 26 nucleotides HP15_2344: HP15_2344 - acetyl-CoA acetyltransferase, at 2,466,745 to 2,468,088 _2344 HP15_2345: HP15_2345 - 3-oxoacyl-(acyl-carrier protein) reductase, at 2,468,405 to 2,469,811 _2345 HP15_tRNA45: HP15_tRNA45 - tRNA-Val, at 2,469,853 to 2,469,928 _tRNA45 HP15_tRNA46: HP15_tRNA46 - tRNA-Asp, at 2,469,947 to 2,470,023 _tRNA46 HP15_tRNA47: HP15_tRNA47 - tRNA-Val, at 2,470,091 to 2,470,166 _tRNA47 HP15_2346: HP15_2346 - conserved hypothetical protein, at 2,470,328 to 2,470,609 _2346 HP15_2347: HP15_2347 - conserved hypothetical protein, at 2,470,636 to 2,471,508 _2347 Position (kb) 2468 2469 2470Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 2467.435 kb on + strand, within HP15_2344at 2467.472 kb on - strand, within HP15_2344at 2467.487 kb on - strand, within HP15_2344at 2467.535 kb on + strand, within HP15_2344at 2467.589 kb on + strand, within HP15_2344at 2467.589 kb on + strand, within HP15_2344at 2467.600 kb on + strand, within HP15_2344at 2467.608 kb on - strand, within HP15_2344at 2467.695 kb on + strand, within HP15_2344at 2467.753 kb on - strand, within HP15_2344at 2467.788 kb on + strand, within HP15_2344at 2467.796 kb on - strand, within HP15_2344at 2467.879 kb on + strand, within HP15_2344at 2467.911 kb on + strand, within HP15_2344at 2467.963 kb on - strandat 2467.963 kb on - strandat 2468.073 kb on + strandat 2468.156 kb on + strandat 2468.238 kb on - strandat 2468.296 kb on - strandat 2468.353 kb on - strandat 2468.414 kb on - strandat 2468.414 kb on - strandat 2468.635 kb on + strand, within HP15_2345at 2468.753 kb on + strand, within HP15_2345at 2468.760 kb on - strand, within HP15_2345at 2468.875 kb on + strand, within HP15_2345at 2468.875 kb on - strand, within HP15_2345at 2468.992 kb on - strand, within HP15_2345at 2469.019 kb on - strand, within HP15_2345at 2469.247 kb on - strand, within HP15_2345at 2469.276 kb on - strand, within HP15_2345at 2469.312 kb on + strand, within HP15_2345at 2469.343 kb on - strand, within HP15_2345at 2469.387 kb on - strand, within HP15_2345at 2469.419 kb on + strand, within HP15_2345at 2469.442 kb on - strand, within HP15_2345at 2469.629 kb on + strand, within HP15_2345at 2469.653 kb on + strand, within HP15_2345at 2469.687 kb on + strandat 2469.699 kb on - strandat 2470.377 kb on + strand, within HP15_2346

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Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
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2,467,435 + HP15_2344 0.51 +1.2
2,467,472 - HP15_2344 0.54 -3.5
2,467,487 - HP15_2344 0.55 +0.2
2,467,535 + HP15_2344 0.59 -3.5
2,467,589 + HP15_2344 0.63 +2.1
2,467,589 + HP15_2344 0.63 +0.0
2,467,600 + HP15_2344 0.64 +0.2
2,467,608 - HP15_2344 0.64 +1.0
2,467,695 + HP15_2344 0.71 +0.1
2,467,753 - HP15_2344 0.75 -3.8
2,467,788 + HP15_2344 0.78 +0.8
2,467,796 - HP15_2344 0.78 -1.9
2,467,879 + HP15_2344 0.84 +1.0
2,467,911 + HP15_2344 0.87 -1.2
2,467,963 - +0.6
2,467,963 - +1.2
2,468,073 + +0.4
2,468,156 + -0.1
2,468,238 - +0.9
2,468,296 - +1.4
2,468,353 - -2.2
2,468,414 - +1.2
2,468,414 - +1.3
2,468,635 + HP15_2345 0.16 +1.3
2,468,753 + HP15_2345 0.25 -4.8
2,468,760 - HP15_2345 0.25 +0.5
2,468,875 + HP15_2345 0.33 +1.2
2,468,875 - HP15_2345 0.33 +0.2
2,468,992 - HP15_2345 0.42 +1.0
2,469,019 - HP15_2345 0.44 +0.7
2,469,247 - HP15_2345 0.60 +0.7
2,469,276 - HP15_2345 0.62 -0.1
2,469,312 + HP15_2345 0.64 -2.8
2,469,343 - HP15_2345 0.67 -1.3
2,469,387 - HP15_2345 0.70 -0.4
2,469,419 + HP15_2345 0.72 -2.6
2,469,442 - HP15_2345 0.74 +1.4
2,469,629 + HP15_2345 0.87 +0.9
2,469,653 + HP15_2345 0.89 -1.6
2,469,687 + -1.4
2,469,699 - +0.4
2,470,377 + HP15_2346 0.17 +0.8

Or see this region's nucleotide sequence