Strain Fitness in Marinobacter adhaerens HP15 around HP15_2342

Experiment: Control growth in Pro99_seawater

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2341 and HP15_2342 are separated by 291 nucleotidesHP15_2342 and HP15_2343 are separated by 43 nucleotides HP15_2341: HP15_2341 - surface antigen (D15), at 2,462,036 to 2,463,685 _2341 HP15_2342: HP15_2342 - conserved hypothetical protein, membrane, at 2,463,977 to 2,464,984 _2342 HP15_2343: HP15_2343 - amidase signature enzyme, at 2,465,028 to 2,466,515 _2343 Position (kb) 2463 2464 2465Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2462.997 kb on - strand, within HP15_2341at 2463.024 kb on - strand, within HP15_2341at 2463.068 kb on + strand, within HP15_2341at 2463.076 kb on - strand, within HP15_2341at 2463.076 kb on - strand, within HP15_2341at 2463.177 kb on - strand, within HP15_2341at 2463.183 kb on - strand, within HP15_2341at 2463.304 kb on + strand, within HP15_2341at 2463.314 kb on + strand, within HP15_2341at 2463.322 kb on - strand, within HP15_2341at 2463.322 kb on - strand, within HP15_2341at 2463.322 kb on - strand, within HP15_2341at 2463.369 kb on + strand, within HP15_2341at 2463.431 kb on - strand, within HP15_2341at 2463.481 kb on + strand, within HP15_2341at 2463.481 kb on + strand, within HP15_2341at 2463.481 kb on + strand, within HP15_2341at 2463.489 kb on - strand, within HP15_2341at 2463.489 kb on - strand, within HP15_2341at 2463.522 kb on - strandat 2463.713 kb on - strandat 2463.844 kb on - strandat 2463.891 kb on + strandat 2463.899 kb on - strandat 2463.899 kb on - strandat 2463.899 kb on - strandat 2463.901 kb on + strandat 2463.901 kb on + strandat 2463.901 kb on + strandat 2463.901 kb on + strandat 2463.901 kb on + strandat 2463.901 kb on + strandat 2463.909 kb on - strandat 2463.909 kb on - strandat 2464.094 kb on + strand, within HP15_2342at 2464.110 kb on - strand, within HP15_2342at 2464.267 kb on - strand, within HP15_2342at 2464.304 kb on - strand, within HP15_2342at 2464.317 kb on - strand, within HP15_2342at 2464.408 kb on + strand, within HP15_2342at 2464.470 kb on + strand, within HP15_2342at 2464.494 kb on - strand, within HP15_2342at 2464.746 kb on + strand, within HP15_2342at 2464.746 kb on + strand, within HP15_2342at 2464.814 kb on + strand, within HP15_2342at 2464.869 kb on + strand, within HP15_2342at 2464.897 kb on - strandat 2464.913 kb on - strandat 2464.948 kb on + strandat 2464.961 kb on - strandat 2465.064 kb on + strandat 2465.072 kb on - strandat 2465.097 kb on + strandat 2465.169 kb on + strandat 2465.193 kb on + strand, within HP15_2343at 2465.193 kb on + strand, within HP15_2343at 2465.260 kb on + strand, within HP15_2343at 2465.260 kb on + strand, within HP15_2343at 2465.267 kb on - strand, within HP15_2343at 2465.268 kb on - strand, within HP15_2343at 2465.272 kb on + strand, within HP15_2343at 2465.303 kb on + strand, within HP15_2343at 2465.320 kb on + strand, within HP15_2343at 2465.325 kb on + strand, within HP15_2343at 2465.333 kb on - strand, within HP15_2343at 2465.333 kb on - strand, within HP15_2343at 2465.542 kb on - strand, within HP15_2343at 2465.594 kb on + strand, within HP15_2343at 2465.594 kb on + strand, within HP15_2343at 2465.800 kb on + strand, within HP15_2343at 2465.805 kb on + strand, within HP15_2343at 2465.805 kb on + strand, within HP15_2343at 2465.887 kb on - strand, within HP15_2343at 2465.921 kb on + strand, within HP15_2343at 2465.967 kb on - strand, within HP15_2343at 2465.969 kb on + strand, within HP15_2343

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Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
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2,462,997 - HP15_2341 0.58 -0.1
2,463,024 - HP15_2341 0.60 -3.3
2,463,068 + HP15_2341 0.63 +0.1
2,463,076 - HP15_2341 0.63 -1.4
2,463,076 - HP15_2341 0.63 +0.5
2,463,177 - HP15_2341 0.69 +1.1
2,463,183 - HP15_2341 0.70 -0.5
2,463,304 + HP15_2341 0.77 +0.6
2,463,314 + HP15_2341 0.77 -1.1
2,463,322 - HP15_2341 0.78 +0.4
2,463,322 - HP15_2341 0.78 +0.6
2,463,322 - HP15_2341 0.78 -3.3
2,463,369 + HP15_2341 0.81 -0.9
2,463,431 - HP15_2341 0.85 +0.8
2,463,481 + HP15_2341 0.88 +0.2
2,463,481 + HP15_2341 0.88 +1.3
2,463,481 + HP15_2341 0.88 +0.7
2,463,489 - HP15_2341 0.88 +0.6
2,463,489 - HP15_2341 0.88 -3.0
2,463,522 - +0.3
2,463,713 - -3.5
2,463,844 - +1.5
2,463,891 + +0.9
2,463,899 - +0.7
2,463,899 - +0.2
2,463,899 - +0.0
2,463,901 + -0.7
2,463,901 + -0.3
2,463,901 + +0.5
2,463,901 + +1.7
2,463,901 + +0.8
2,463,901 + +0.7
2,463,909 - -1.7
2,463,909 - -1.5
2,464,094 + HP15_2342 0.12 +1.2
2,464,110 - HP15_2342 0.13 -1.7
2,464,267 - HP15_2342 0.29 -0.7
2,464,304 - HP15_2342 0.32 +0.9
2,464,317 - HP15_2342 0.34 +0.5
2,464,408 + HP15_2342 0.43 -1.5
2,464,470 + HP15_2342 0.49 +0.7
2,464,494 - HP15_2342 0.51 +1.7
2,464,746 + HP15_2342 0.76 +1.2
2,464,746 + HP15_2342 0.76 +0.6
2,464,814 + HP15_2342 0.83 -3.2
2,464,869 + HP15_2342 0.88 -0.3
2,464,897 - +0.5
2,464,913 - -2.4
2,464,948 + -3.9
2,464,961 - -2.9
2,465,064 + +1.5
2,465,072 - -0.2
2,465,097 + +0.0
2,465,169 + +0.6
2,465,193 + HP15_2343 0.11 -2.3
2,465,193 + HP15_2343 0.11 +0.2
2,465,260 + HP15_2343 0.16 -1.6
2,465,260 + HP15_2343 0.16 -4.2
2,465,267 - HP15_2343 0.16 +0.6
2,465,268 - HP15_2343 0.16 +1.0
2,465,272 + HP15_2343 0.16 +0.7
2,465,303 + HP15_2343 0.18 +0.5
2,465,320 + HP15_2343 0.20 +0.4
2,465,325 + HP15_2343 0.20 -0.2
2,465,333 - HP15_2343 0.20 -1.5
2,465,333 - HP15_2343 0.20 -0.0
2,465,542 - HP15_2343 0.35 +0.0
2,465,594 + HP15_2343 0.38 -2.6
2,465,594 + HP15_2343 0.38 +0.8
2,465,800 + HP15_2343 0.52 -1.5
2,465,805 + HP15_2343 0.52 +1.2
2,465,805 + HP15_2343 0.52 +0.2
2,465,887 - HP15_2343 0.58 +0.2
2,465,921 + HP15_2343 0.60 +1.2
2,465,967 - HP15_2343 0.63 -2.4
2,465,969 + HP15_2343 0.63 +0.6

Or see this region's nucleotide sequence