Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2340 and HP15_2341 are separated by 74 nucleotides HP15_2341 and HP15_2342 are separated by 291 nucleotides
HP15_2340: HP15_2340 - protein containing DUF490, at 2,458,278 to 2,461,961
_2340
HP15_2341: HP15_2341 - surface antigen (D15), at 2,462,036 to 2,463,685
_2341
HP15_2342: HP15_2342 - conserved hypothetical protein, membrane, at 2,463,977 to 2,464,984
_2342
Position (kb)
2462
2463
2464 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2461.050 kb on + strand, within HP15_2340 at 2461.078 kb on - strand, within HP15_2340 at 2461.108 kb on - strand, within HP15_2340 at 2461.135 kb on - strand, within HP15_2340 at 2461.156 kb on - strand, within HP15_2340 at 2461.194 kb on + strand, within HP15_2340 at 2461.195 kb on - strand, within HP15_2340 at 2461.216 kb on + strand, within HP15_2340 at 2461.234 kb on - strand, within HP15_2340 at 2461.529 kb on + strand, within HP15_2340 at 2461.529 kb on + strand, within HP15_2340 at 2461.537 kb on - strand, within HP15_2340 at 2461.610 kb on + strand at 2461.625 kb on + strand at 2461.676 kb on - strand at 2461.804 kb on + strand at 2461.978 kb on - strand at 2462.020 kb on - strand at 2462.034 kb on + strand at 2462.041 kb on + strand at 2462.041 kb on + strand at 2462.049 kb on - strand at 2462.098 kb on - strand at 2462.143 kb on - strand at 2462.345 kb on - strand, within HP15_2341 at 2462.394 kb on - strand, within HP15_2341 at 2462.409 kb on + strand, within HP15_2341 at 2462.417 kb on - strand, within HP15_2341 at 2462.463 kb on + strand, within HP15_2341 at 2462.463 kb on + strand, within HP15_2341 at 2462.463 kb on + strand, within HP15_2341 at 2462.471 kb on - strand, within HP15_2341 at 2462.471 kb on - strand, within HP15_2341 at 2462.471 kb on - strand, within HP15_2341 at 2462.501 kb on + strand, within HP15_2341 at 2462.501 kb on + strand, within HP15_2341 at 2462.756 kb on - strand, within HP15_2341 at 2462.756 kb on - strand, within HP15_2341 at 2462.786 kb on + strand, within HP15_2341 at 2462.791 kb on + strand, within HP15_2341 at 2462.876 kb on + strand, within HP15_2341 at 2462.997 kb on - strand, within HP15_2341 at 2463.024 kb on - strand, within HP15_2341 at 2463.068 kb on + strand, within HP15_2341 at 2463.076 kb on - strand, within HP15_2341 at 2463.076 kb on - strand, within HP15_2341 at 2463.177 kb on - strand, within HP15_2341 at 2463.183 kb on - strand, within HP15_2341 at 2463.304 kb on + strand, within HP15_2341 at 2463.314 kb on + strand, within HP15_2341 at 2463.322 kb on - strand, within HP15_2341 at 2463.322 kb on - strand, within HP15_2341 at 2463.322 kb on - strand, within HP15_2341 at 2463.369 kb on + strand, within HP15_2341 at 2463.431 kb on - strand, within HP15_2341 at 2463.481 kb on + strand, within HP15_2341 at 2463.481 kb on + strand, within HP15_2341 at 2463.481 kb on + strand, within HP15_2341 at 2463.489 kb on - strand, within HP15_2341 at 2463.489 kb on - strand, within HP15_2341 at 2463.522 kb on - strand at 2463.713 kb on - strand at 2463.844 kb on - strand at 2463.891 kb on + strand at 2463.899 kb on - strand at 2463.899 kb on - strand at 2463.899 kb on - strand at 2463.901 kb on + strand at 2463.901 kb on + strand at 2463.901 kb on + strand at 2463.901 kb on + strand at 2463.901 kb on + strand at 2463.901 kb on + strand at 2463.909 kb on - strand at 2463.909 kb on - strand at 2464.094 kb on + strand, within HP15_2342 at 2464.110 kb on - strand, within HP15_2342 at 2464.267 kb on - strand, within HP15_2342 at 2464.304 kb on - strand, within HP15_2342 at 2464.317 kb on - strand, within HP15_2342 at 2464.408 kb on + strand, within HP15_2342 at 2464.470 kb on + strand, within HP15_2342 at 2464.494 kb on - strand, within HP15_2342
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 2,461,050 + HP15_2340 0.75 -0.3 2,461,078 - HP15_2340 0.76 +0.5 2,461,108 - HP15_2340 0.77 +0.0 2,461,135 - HP15_2340 0.78 -2.7 2,461,156 - HP15_2340 0.78 +0.5 2,461,194 + HP15_2340 0.79 +0.4 2,461,195 - HP15_2340 0.79 -1.0 2,461,216 + HP15_2340 0.80 +0.5 2,461,234 - HP15_2340 0.80 -0.0 2,461,529 + HP15_2340 0.88 +0.7 2,461,529 + HP15_2340 0.88 +0.5 2,461,537 - HP15_2340 0.88 -3.2 2,461,610 + +0.4 2,461,625 + -3.1 2,461,676 - -0.2 2,461,804 + +0.4 2,461,978 - +0.3 2,462,020 - -1.2 2,462,034 + +0.2 2,462,041 + -1.6 2,462,041 + +0.6 2,462,049 - +0.8 2,462,098 - +0.6 2,462,143 - +0.9 2,462,345 - HP15_2341 0.19 +1.4 2,462,394 - HP15_2341 0.22 +0.2 2,462,409 + HP15_2341 0.23 -0.8 2,462,417 - HP15_2341 0.23 +0.6 2,462,463 + HP15_2341 0.26 +1.0 2,462,463 + HP15_2341 0.26 +0.9 2,462,463 + HP15_2341 0.26 +0.1 2,462,471 - HP15_2341 0.26 +0.2 2,462,471 - HP15_2341 0.26 -0.3 2,462,471 - HP15_2341 0.26 -0.0 2,462,501 + HP15_2341 0.28 -2.3 2,462,501 + HP15_2341 0.28 -3.6 2,462,756 - HP15_2341 0.44 +0.1 2,462,756 - HP15_2341 0.44 +0.4 2,462,786 + HP15_2341 0.45 +0.9 2,462,791 + HP15_2341 0.46 +1.7 2,462,876 + HP15_2341 0.51 +0.8 2,462,997 - HP15_2341 0.58 -0.1 2,463,024 - HP15_2341 0.60 -3.3 2,463,068 + HP15_2341 0.63 +0.1 2,463,076 - HP15_2341 0.63 -1.4 2,463,076 - HP15_2341 0.63 +0.5 2,463,177 - HP15_2341 0.69 +1.1 2,463,183 - HP15_2341 0.70 -0.5 2,463,304 + HP15_2341 0.77 +0.6 2,463,314 + HP15_2341 0.77 -1.1 2,463,322 - HP15_2341 0.78 +0.4 2,463,322 - HP15_2341 0.78 +0.6 2,463,322 - HP15_2341 0.78 -3.3 2,463,369 + HP15_2341 0.81 -0.9 2,463,431 - HP15_2341 0.85 +0.8 2,463,481 + HP15_2341 0.88 +0.2 2,463,481 + HP15_2341 0.88 +1.3 2,463,481 + HP15_2341 0.88 +0.7 2,463,489 - HP15_2341 0.88 +0.6 2,463,489 - HP15_2341 0.88 -3.0 2,463,522 - +0.3 2,463,713 - -3.5 2,463,844 - +1.5 2,463,891 + +0.9 2,463,899 - +0.7 2,463,899 - +0.2 2,463,899 - +0.0 2,463,901 + -0.7 2,463,901 + -0.3 2,463,901 + +0.5 2,463,901 + +1.7 2,463,901 + +0.8 2,463,901 + +0.7 2,463,909 - -1.7 2,463,909 - -1.5 2,464,094 + HP15_2342 0.12 +1.2 2,464,110 - HP15_2342 0.13 -1.7 2,464,267 - HP15_2342 0.29 -0.7 2,464,304 - HP15_2342 0.32 +0.9 2,464,317 - HP15_2342 0.34 +0.5 2,464,408 + HP15_2342 0.43 -1.5 2,464,470 + HP15_2342 0.49 +0.7 2,464,494 - HP15_2342 0.51 +1.7
Or see this region's nucleotide sequence