Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_221 and HP15_223 are separated by 95 nucleotides HP15_223 and HP15_224 are separated by 124 nucleotides HP15_224 and HP15_225 overlap by 4 nucleotides HP15_225 and HP15_226 are separated by 46 nucleotides
HP15_221: HP15_221 - anti-RNA polymerase sigma 70 factor, at 208,771 to 209,250
_221
HP15_223: HP15_223 - peptidylprolyl isomerase, FKBP-type, at 209,346 to 210,062
_223
HP15_224: HP15_224 - conserved hypothetical protein, secreted, at 210,187 to 210,573
_224
HP15_225: HP15_225 - conserved hypothetical protein, at 210,570 to 211,127
_225
HP15_226: HP15_226 - ABC transporter ATP-binding protein-like protein, at 211,174 to 213,117
_226
Position (kb) 210
211 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 209.368 kb on + strand at 209.397 kb on + strand at 209.402 kb on + strand at 209.405 kb on - strand at 209.543 kb on - strand, within HP15_223 at 209.789 kb on + strand, within HP15_223 at 210.005 kb on + strand at 210.090 kb on + strand at 210.098 kb on - strand at 210.107 kb on + strand at 210.150 kb on - strand at 210.238 kb on + strand, within HP15_224 at 210.345 kb on + strand, within HP15_224 at 210.345 kb on + strand, within HP15_224 at 210.350 kb on + strand, within HP15_224 at 210.464 kb on - strand, within HP15_224 at 210.486 kb on + strand, within HP15_224 at 210.494 kb on - strand, within HP15_224 at 210.494 kb on - strand, within HP15_224 at 210.650 kb on - strand, within HP15_225 at 210.727 kb on - strand, within HP15_225 at 210.758 kb on - strand, within HP15_225 at 210.817 kb on - strand, within HP15_225 at 210.821 kb on + strand, within HP15_225 at 210.831 kb on + strand, within HP15_225 at 210.866 kb on + strand, within HP15_225 at 210.895 kb on - strand, within HP15_225 at 210.918 kb on + strand, within HP15_225 at 210.940 kb on - strand, within HP15_225 at 210.999 kb on + strand, within HP15_225 at 210.999 kb on + strand, within HP15_225 at 210.999 kb on + strand, within HP15_225 at 211.026 kb on + strand, within HP15_225 at 211.048 kb on + strand, within HP15_225 at 211.135 kb on + strand at 211.143 kb on + strand at 211.251 kb on - strand at 211.323 kb on + strand at 211.328 kb on + strand at 211.328 kb on + strand at 211.397 kb on + strand, within HP15_226 at 211.528 kb on - strand, within HP15_226 at 211.567 kb on + strand, within HP15_226
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 209,368 + +0.2 209,397 + -0.4 209,402 + +0.2 209,405 - -1.9 209,543 - HP15_223 0.27 -2.2 209,789 + HP15_223 0.62 +0.8 210,005 + +0.5 210,090 + +0.4 210,098 - +0.9 210,107 + +0.7 210,150 - +0.4 210,238 + HP15_224 0.13 -1.0 210,345 + HP15_224 0.41 -3.2 210,345 + HP15_224 0.41 -1.9 210,350 + HP15_224 0.42 -2.0 210,464 - HP15_224 0.72 -0.2 210,486 + HP15_224 0.77 -0.4 210,494 - HP15_224 0.79 -0.8 210,494 - HP15_224 0.79 -0.5 210,650 - HP15_225 0.14 +0.0 210,727 - HP15_225 0.28 -0.2 210,758 - HP15_225 0.34 -1.0 210,817 - HP15_225 0.44 +0.7 210,821 + HP15_225 0.45 -3.0 210,831 + HP15_225 0.47 +0.3 210,866 + HP15_225 0.53 +0.3 210,895 - HP15_225 0.58 -1.5 210,918 + HP15_225 0.62 +0.6 210,940 - HP15_225 0.66 -3.1 210,999 + HP15_225 0.77 -0.0 210,999 + HP15_225 0.77 -0.6 210,999 + HP15_225 0.77 -0.5 211,026 + HP15_225 0.82 +1.2 211,048 + HP15_225 0.86 -1.5 211,135 + -3.1 211,143 + +0.2 211,251 - +1.1 211,323 + +0.3 211,328 + +0.3 211,328 + -1.0 211,397 + HP15_226 0.11 +0.4 211,528 - HP15_226 0.18 -3.4 211,567 + HP15_226 0.20 -3.0
Or see this region's nucleotide sequence