Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1921 and HP15_1922 overlap by 4 nucleotides HP15_1922 and HP15_1923 overlap by 11 nucleotides
HP15_1921: HP15_1921 - conserved hypothetical protein, secreted, at 2,036,715 to 2,038,073
_1921
HP15_1922: HP15_1922 - polysaccharide biosynthesis protein, at 2,038,070 to 2,038,948
_1922
HP15_1923: HP15_1923 - PEP-CTERM locus polysaccharide chain length determinant, at 2,038,938 to 2,040,518
_1923
Position (kb)
2038
2039 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2037.192 kb on + strand, within HP15_1921 at 2037.249 kb on - strand, within HP15_1921 at 2037.487 kb on + strand, within HP15_1921 at 2037.495 kb on - strand, within HP15_1921 at 2037.495 kb on - strand, within HP15_1921 at 2037.495 kb on - strand, within HP15_1921 at 2037.495 kb on - strand, within HP15_1921 at 2037.495 kb on - strand, within HP15_1921 at 2037.495 kb on - strand, within HP15_1921 at 2037.520 kb on + strand, within HP15_1921 at 2037.548 kb on + strand, within HP15_1921 at 2037.548 kb on + strand, within HP15_1921 at 2037.556 kb on - strand, within HP15_1921 at 2037.566 kb on - strand, within HP15_1921 at 2037.579 kb on + strand, within HP15_1921 at 2037.579 kb on + strand, within HP15_1921 at 2037.587 kb on - strand, within HP15_1921 at 2037.606 kb on + strand, within HP15_1921 at 2037.670 kb on + strand, within HP15_1921 at 2037.780 kb on + strand, within HP15_1921 at 2037.814 kb on + strand, within HP15_1921 at 2037.962 kb on + strand at 2037.962 kb on - strand at 2038.017 kb on + strand at 2038.113 kb on - strand at 2038.204 kb on + strand, within HP15_1922 at 2038.224 kb on - strand, within HP15_1922 at 2038.355 kb on - strand, within HP15_1922 at 2038.585 kb on + strand, within HP15_1922 at 2038.587 kb on + strand, within HP15_1922 at 2038.735 kb on + strand, within HP15_1922 at 2038.853 kb on - strand, within HP15_1922 at 2038.853 kb on - strand, within HP15_1922 at 2038.919 kb on - strand at 2038.923 kb on + strand at 2039.002 kb on - strand at 2039.102 kb on + strand, within HP15_1923 at 2039.113 kb on + strand, within HP15_1923 at 2039.167 kb on - strand, within HP15_1923 at 2039.237 kb on - strand, within HP15_1923 at 2039.276 kb on + strand, within HP15_1923 at 2039.294 kb on + strand, within HP15_1923 at 2039.382 kb on - strand, within HP15_1923 at 2039.412 kb on - strand, within HP15_1923 at 2039.511 kb on + strand, within HP15_1923 at 2039.511 kb on + strand, within HP15_1923 at 2039.707 kb on + strand, within HP15_1923 at 2039.779 kb on + strand, within HP15_1923 at 2039.787 kb on + strand, within HP15_1923 at 2039.787 kb on - strand, within HP15_1923
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 2,037,192 + HP15_1921 0.35 +0.1 2,037,249 - HP15_1921 0.39 +0.2 2,037,487 + HP15_1921 0.57 -0.1 2,037,495 - HP15_1921 0.57 -2.0 2,037,495 - HP15_1921 0.57 -0.3 2,037,495 - HP15_1921 0.57 -0.6 2,037,495 - HP15_1921 0.57 +0.5 2,037,495 - HP15_1921 0.57 -0.7 2,037,495 - HP15_1921 0.57 -2.5 2,037,520 + HP15_1921 0.59 +0.7 2,037,548 + HP15_1921 0.61 -1.1 2,037,548 + HP15_1921 0.61 +0.4 2,037,556 - HP15_1921 0.62 -2.6 2,037,566 - HP15_1921 0.63 +0.8 2,037,579 + HP15_1921 0.64 -0.0 2,037,579 + HP15_1921 0.64 +0.6 2,037,587 - HP15_1921 0.64 +0.1 2,037,606 + HP15_1921 0.66 -1.7 2,037,670 + HP15_1921 0.70 +0.1 2,037,780 + HP15_1921 0.78 +0.2 2,037,814 + HP15_1921 0.81 -0.1 2,037,962 + +0.9 2,037,962 - +0.1 2,038,017 + +0.7 2,038,113 - -3.1 2,038,204 + HP15_1922 0.15 -2.6 2,038,224 - HP15_1922 0.18 +0.4 2,038,355 - HP15_1922 0.32 +0.3 2,038,585 + HP15_1922 0.59 +0.6 2,038,587 + HP15_1922 0.59 +0.8 2,038,735 + HP15_1922 0.76 +1.3 2,038,853 - HP15_1922 0.89 +0.7 2,038,853 - HP15_1922 0.89 -1.6 2,038,919 - -1.9 2,038,923 + -2.0 2,039,002 - -2.4 2,039,102 + HP15_1923 0.10 -0.3 2,039,113 + HP15_1923 0.11 +0.6 2,039,167 - HP15_1923 0.14 +0.2 2,039,237 - HP15_1923 0.19 +0.2 2,039,276 + HP15_1923 0.21 -2.5 2,039,294 + HP15_1923 0.23 -0.0 2,039,382 - HP15_1923 0.28 -2.2 2,039,412 - HP15_1923 0.30 +1.3 2,039,511 + HP15_1923 0.36 +0.4 2,039,511 + HP15_1923 0.36 -2.4 2,039,707 + HP15_1923 0.49 -3.5 2,039,779 + HP15_1923 0.53 +1.1 2,039,787 + HP15_1923 0.54 -3.0 2,039,787 - HP15_1923 0.54 +0.1
Or see this region's nucleotide sequence