Strain Fitness in Marinobacter adhaerens HP15 around HP15_1885

Experiment: Control growth in Pro99_seawater

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1882 and HP15_1883 are separated by 31 nucleotidesHP15_1883 and HP15_1884 are separated by 31 nucleotidesHP15_1884 and HP15_1885 are separated by 3 nucleotidesHP15_1885 and HP15_1886 are separated by 348 nucleotides HP15_1882: HP15_1882 - ribonuclease D, at 1,986,276 to 1,987,433 _1882 HP15_1883: HP15_1883 - recombination protein RecR, at 1,987,465 to 1,988,067 _1883 HP15_1884: HP15_1884 - protein belonging to uncharacterized protein family UPF0133, at 1,988,099 to 1,988,422 _1884 HP15_1885: HP15_1885 - DNA polymerase III subunits gamma and tau, at 1,988,426 to 1,990,378 _1885 HP15_1886: HP15_1886 - oxidoreductase, 2OG-Fe(II) oxygenase family protein, at 1,990,727 to 1,991,482 _1886 Position (kb) 1988 1989 1990 1991Strain fitness (log2 ratio) -2 -1 0 1at 1987.606 kb on - strand, within HP15_1883at 1988.098 kb on - strandat 1988.136 kb on - strand, within HP15_1884at 1990.412 kb on - strandat 1990.468 kb on + strandat 1990.981 kb on + strand, within HP15_1886at 1990.981 kb on + strand, within HP15_1886at 1990.989 kb on - strand, within HP15_1886at 1990.989 kb on - strand, within HP15_1886at 1990.989 kb on - strand, within HP15_1886at 1990.991 kb on + strand, within HP15_1886at 1991.048 kb on - strand, within HP15_1886at 1991.185 kb on + strand, within HP15_1886at 1991.301 kb on - strand, within HP15_1886at 1991.325 kb on + strand, within HP15_1886at 1991.331 kb on - strand, within HP15_1886

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Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
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1,987,606 - HP15_1883 0.23 -2.7
1,988,098 - -0.6
1,988,136 - HP15_1884 0.11 +1.4
1,990,412 - +1.2
1,990,468 + -2.1
1,990,981 + HP15_1886 0.34 +1.0
1,990,981 + HP15_1886 0.34 -2.2
1,990,989 - HP15_1886 0.35 +0.4
1,990,989 - HP15_1886 0.35 -0.2
1,990,989 - HP15_1886 0.35 -2.6
1,990,991 + HP15_1886 0.35 +0.2
1,991,048 - HP15_1886 0.42 -0.3
1,991,185 + HP15_1886 0.61 +1.2
1,991,301 - HP15_1886 0.76 +0.0
1,991,325 + HP15_1886 0.79 -0.3
1,991,331 - HP15_1886 0.80 +1.4

Or see this region's nucleotide sequence