Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1873 and HP15_1874 are separated by 6 nucleotides HP15_1874 and HP15_1875 are separated by 412 nucleotides HP15_1875 and HP15_1876 are separated by 72 nucleotides HP15_1876 and HP15_1877 are separated by 17 nucleotides
HP15_1873: HP15_1873 - TPR repeat protein, at 1,978,672 to 1,980,078
_1873
HP15_1874: HP15_1874 - conserved hypothetical protein, at 1,980,085 to 1,980,567
_1874
HP15_1875: HP15_1875 - conserved hypothetical protein, at 1,980,980 to 1,982,119
_1875
HP15_1876: HP15_1876 - ATPase associated with various cellular activities AAA_5, at 1,982,192 to 1,983,034
_1876
HP15_1877: HP15_1877 - hypothetical protein, at 1,983,052 to 1,983,405
_1877
Position (kb)
1980
1981
1982
1983 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1980.189 kb on - strand, within HP15_1874 at 1980.434 kb on + strand, within HP15_1874 at 1980.453 kb on + strand, within HP15_1874 at 1980.564 kb on + strand at 1980.599 kb on - strand at 1980.629 kb on + strand at 1980.630 kb on + strand at 1980.703 kb on - strand at 1980.703 kb on - strand at 1980.957 kb on + strand at 1981.030 kb on + strand at 1981.140 kb on - strand, within HP15_1875 at 1981.423 kb on + strand, within HP15_1875 at 1981.467 kb on + strand, within HP15_1875 at 1981.475 kb on - strand, within HP15_1875 at 1981.634 kb on + strand, within HP15_1875 at 1981.834 kb on + strand, within HP15_1875 at 1981.834 kb on + strand, within HP15_1875 at 1981.834 kb on + strand, within HP15_1875 at 1981.842 kb on - strand, within HP15_1875 at 1981.842 kb on - strand, within HP15_1875 at 1981.842 kb on - strand, within HP15_1875 at 1981.946 kb on - strand, within HP15_1875 at 1982.015 kb on - strand at 1982.016 kb on + strand at 1982.069 kb on + strand at 1982.247 kb on - strand at 1982.395 kb on - strand, within HP15_1876 at 1982.396 kb on - strand, within HP15_1876 at 1982.486 kb on + strand, within HP15_1876 at 1982.719 kb on + strand, within HP15_1876
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 1,980,189 - HP15_1874 0.22 +0.4 1,980,434 + HP15_1874 0.72 +0.2 1,980,453 + HP15_1874 0.76 +0.1 1,980,564 + -0.3 1,980,599 - -2.7 1,980,629 + -1.2 1,980,630 + -1.4 1,980,703 - +0.3 1,980,703 - +0.3 1,980,957 + +0.2 1,981,030 + +0.6 1,981,140 - HP15_1875 0.14 -2.9 1,981,423 + HP15_1875 0.39 +1.2 1,981,467 + HP15_1875 0.43 -2.8 1,981,475 - HP15_1875 0.43 -0.2 1,981,634 + HP15_1875 0.57 -0.3 1,981,834 + HP15_1875 0.75 -3.2 1,981,834 + HP15_1875 0.75 +0.6 1,981,834 + HP15_1875 0.75 +0.2 1,981,842 - HP15_1875 0.76 -3.2 1,981,842 - HP15_1875 0.76 +0.1 1,981,842 - HP15_1875 0.76 -0.5 1,981,946 - HP15_1875 0.85 +1.8 1,982,015 - -0.3 1,982,016 + +1.7 1,982,069 + +0.5 1,982,247 - +0.8 1,982,395 - HP15_1876 0.24 +0.7 1,982,396 - HP15_1876 0.24 -0.1 1,982,486 + HP15_1876 0.35 -2.9 1,982,719 + HP15_1876 0.63 +0.5
Or see this region's nucleotide sequence