Strain Fitness in Marinobacter adhaerens HP15 around HP15_1875

Experiment: Control growth in Pro99_seawater

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1873 and HP15_1874 are separated by 6 nucleotidesHP15_1874 and HP15_1875 are separated by 412 nucleotidesHP15_1875 and HP15_1876 are separated by 72 nucleotidesHP15_1876 and HP15_1877 are separated by 17 nucleotides HP15_1873: HP15_1873 - TPR repeat protein, at 1,978,672 to 1,980,078 _1873 HP15_1874: HP15_1874 - conserved hypothetical protein, at 1,980,085 to 1,980,567 _1874 HP15_1875: HP15_1875 - conserved hypothetical protein, at 1,980,980 to 1,982,119 _1875 HP15_1876: HP15_1876 - ATPase associated with various cellular activities AAA_5, at 1,982,192 to 1,983,034 _1876 HP15_1877: HP15_1877 - hypothetical protein, at 1,983,052 to 1,983,405 _1877 Position (kb) 1980 1981 1982 1983Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1980.189 kb on - strand, within HP15_1874at 1980.434 kb on + strand, within HP15_1874at 1980.453 kb on + strand, within HP15_1874at 1980.564 kb on + strandat 1980.599 kb on - strandat 1980.629 kb on + strandat 1980.630 kb on + strandat 1980.703 kb on - strandat 1980.703 kb on - strandat 1980.957 kb on + strandat 1981.030 kb on + strandat 1981.140 kb on - strand, within HP15_1875at 1981.423 kb on + strand, within HP15_1875at 1981.467 kb on + strand, within HP15_1875at 1981.475 kb on - strand, within HP15_1875at 1981.634 kb on + strand, within HP15_1875at 1981.834 kb on + strand, within HP15_1875at 1981.834 kb on + strand, within HP15_1875at 1981.834 kb on + strand, within HP15_1875at 1981.842 kb on - strand, within HP15_1875at 1981.842 kb on - strand, within HP15_1875at 1981.842 kb on - strand, within HP15_1875at 1981.946 kb on - strand, within HP15_1875at 1982.015 kb on - strandat 1982.016 kb on + strandat 1982.069 kb on + strandat 1982.247 kb on - strandat 1982.395 kb on - strand, within HP15_1876at 1982.396 kb on - strand, within HP15_1876at 1982.486 kb on + strand, within HP15_1876at 1982.719 kb on + strand, within HP15_1876

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Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
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1,980,189 - HP15_1874 0.22 +0.4
1,980,434 + HP15_1874 0.72 +0.2
1,980,453 + HP15_1874 0.76 +0.1
1,980,564 + -0.3
1,980,599 - -2.7
1,980,629 + -1.2
1,980,630 + -1.4
1,980,703 - +0.3
1,980,703 - +0.3
1,980,957 + +0.2
1,981,030 + +0.6
1,981,140 - HP15_1875 0.14 -2.9
1,981,423 + HP15_1875 0.39 +1.2
1,981,467 + HP15_1875 0.43 -2.8
1,981,475 - HP15_1875 0.43 -0.2
1,981,634 + HP15_1875 0.57 -0.3
1,981,834 + HP15_1875 0.75 -3.2
1,981,834 + HP15_1875 0.75 +0.6
1,981,834 + HP15_1875 0.75 +0.2
1,981,842 - HP15_1875 0.76 -3.2
1,981,842 - HP15_1875 0.76 +0.1
1,981,842 - HP15_1875 0.76 -0.5
1,981,946 - HP15_1875 0.85 +1.8
1,982,015 - -0.3
1,982,016 + +1.7
1,982,069 + +0.5
1,982,247 - +0.8
1,982,395 - HP15_1876 0.24 +0.7
1,982,396 - HP15_1876 0.24 -0.1
1,982,486 + HP15_1876 0.35 -2.9
1,982,719 + HP15_1876 0.63 +0.5

Or see this region's nucleotide sequence