Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1866 and HP15_1867 are separated by 88 nucleotides HP15_1867 and HP15_1868 are separated by 44 nucleotides HP15_1868 and HP15_1869 are separated by 62 nucleotides
HP15_1866: HP15_1866 - conserved hypothetical protein, at 1,972,409 to 1,973,308
_1866
HP15_1867: HP15_1867 - biopolymer transport protein, at 1,973,397 to 1,973,837
_1867
HP15_1868: HP15_1868 - biopolymer transport protein ExbD/TolR, at 1,973,882 to 1,974,346
_1868
HP15_1869: HP15_1869 - biopolymer transport protein, at 1,974,409 to 1,974,990
_1869
Position (kb) 1973
1974 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1972.520 kb on + strand, within HP15_1866 at 1972.590 kb on + strand, within HP15_1866 at 1972.711 kb on - strand, within HP15_1866 at 1972.775 kb on - strand, within HP15_1866 at 1972.865 kb on - strand, within HP15_1866 at 1972.926 kb on + strand, within HP15_1866 at 1973.112 kb on - strand, within HP15_1866 at 1973.215 kb on + strand, within HP15_1866 at 1973.289 kb on + strand at 1973.347 kb on + strand at 1973.347 kb on + strand at 1973.347 kb on + strand at 1973.427 kb on + strand at 1973.460 kb on + strand, within HP15_1867 at 1973.468 kb on - strand, within HP15_1867 at 1973.468 kb on - strand, within HP15_1867 at 1973.614 kb on + strand, within HP15_1867 at 1973.632 kb on + strand, within HP15_1867 at 1973.806 kb on - strand at 1973.821 kb on + strand at 1973.822 kb on - strand at 1973.886 kb on - strand at 1973.886 kb on - strand at 1973.937 kb on + strand, within HP15_1868 at 1973.976 kb on - strand, within HP15_1868 at 1974.037 kb on + strand, within HP15_1868 at 1974.045 kb on - strand, within HP15_1868 at 1974.117 kb on + strand, within HP15_1868 at 1974.130 kb on - strand, within HP15_1868 at 1974.349 kb on + strand at 1974.385 kb on + strand at 1974.425 kb on + strand at 1974.486 kb on + strand, within HP15_1869 at 1974.492 kb on - strand, within HP15_1869 at 1974.492 kb on - strand, within HP15_1869 at 1974.676 kb on - strand, within HP15_1869 at 1974.681 kb on - strand, within HP15_1869 at 1974.772 kb on + strand, within HP15_1869 at 1974.820 kb on + strand, within HP15_1869
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 1,972,520 + HP15_1866 0.12 +0.1 1,972,590 + HP15_1866 0.20 -4.7 1,972,711 - HP15_1866 0.34 -1.9 1,972,775 - HP15_1866 0.41 -1.3 1,972,865 - HP15_1866 0.51 -2.3 1,972,926 + HP15_1866 0.57 +0.4 1,973,112 - HP15_1866 0.78 +0.2 1,973,215 + HP15_1866 0.90 +0.5 1,973,289 + +1.0 1,973,347 + +1.2 1,973,347 + +0.4 1,973,347 + +0.0 1,973,427 + +0.4 1,973,460 + HP15_1867 0.14 -3.0 1,973,468 - HP15_1867 0.16 +0.4 1,973,468 - HP15_1867 0.16 +0.1 1,973,614 + HP15_1867 0.49 +0.0 1,973,632 + HP15_1867 0.53 -0.1 1,973,806 - -0.3 1,973,821 + +0.1 1,973,822 - -3.1 1,973,886 - -3.1 1,973,886 - -2.2 1,973,937 + HP15_1868 0.12 +0.4 1,973,976 - HP15_1868 0.20 +0.5 1,974,037 + HP15_1868 0.33 +0.3 1,974,045 - HP15_1868 0.35 -4.1 1,974,117 + HP15_1868 0.51 -2.4 1,974,130 - HP15_1868 0.53 +2.0 1,974,349 + -0.1 1,974,385 + +0.4 1,974,425 + -0.1 1,974,486 + HP15_1869 0.13 -1.3 1,974,492 - HP15_1869 0.14 +1.1 1,974,492 - HP15_1869 0.14 -2.9 1,974,676 - HP15_1869 0.46 +0.7 1,974,681 - HP15_1869 0.47 -1.6 1,974,772 + HP15_1869 0.62 +0.1 1,974,820 + HP15_1869 0.71 +0.4
Or see this region's nucleotide sequence