Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1760 and HP15_1761 are separated by 45 nucleotides HP15_1761 and HP15_1762 are separated by 42 nucleotides HP15_1762 and HP15_1763 are separated by 60 nucleotides HP15_1763 and HP15_1764 are separated by 14 nucleotides
HP15_1760: HP15_1760 - oxygen-independent coproporphyrinogen III oxidase, Fe-S oxidoreductase, at 1,858,916 to 1,859,812
_1760
HP15_1761: HP15_1761 - phosphohistidine phosphatase, SixA, at 1,859,858 to 1,860,307
_1761
HP15_1762: HP15_1762 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase, at 1,860,350 to 1,861,417
_1762
HP15_1763: HP15_1763 - anti-anti-sigma regulatory factor (antagonist of anti-sigma factor), at 1,861,478 to 1,861,969
_1763
HP15_1764: HP15_1764 - two-component response regulator, at 1,861,984 to 1,862,925
_1764
Position (kb) 1860
1861
1862 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1859.365 kb on + strand, within HP15_1760 at 1859.780 kb on - strand at 1859.804 kb on + strand at 1859.807 kb on + strand at 1859.934 kb on + strand, within HP15_1761 at 1859.944 kb on + strand, within HP15_1761 at 1860.149 kb on + strand, within HP15_1761 at 1860.151 kb on + strand, within HP15_1761 at 1860.151 kb on + strand, within HP15_1761 at 1860.159 kb on - strand, within HP15_1761 at 1860.162 kb on + strand, within HP15_1761 at 1860.170 kb on - strand, within HP15_1761 at 1860.220 kb on + strand, within HP15_1761 at 1860.301 kb on + strand at 1860.309 kb on + strand at 1861.450 kb on - strand at 1861.465 kb on - strand at 1861.549 kb on - strand, within HP15_1763 at 1861.841 kb on - strand, within HP15_1763 at 1862.257 kb on - strand, within HP15_1764 at 1862.312 kb on - strand, within HP15_1764
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 1,859,365 + HP15_1760 0.50 +0.2 1,859,780 - -2.6 1,859,804 + -0.6 1,859,807 + +0.3 1,859,934 + HP15_1761 0.17 +0.8 1,859,944 + HP15_1761 0.19 -0.5 1,860,149 + HP15_1761 0.65 -2.5 1,860,151 + HP15_1761 0.65 -2.6 1,860,151 + HP15_1761 0.65 +0.4 1,860,159 - HP15_1761 0.67 -2.1 1,860,162 + HP15_1761 0.68 -1.6 1,860,170 - HP15_1761 0.69 +0.6 1,860,220 + HP15_1761 0.80 +0.5 1,860,301 + +1.2 1,860,309 + +0.5 1,861,450 - -1.2 1,861,465 - -0.2 1,861,549 - HP15_1763 0.14 -3.9 1,861,841 - HP15_1763 0.74 -0.5 1,862,257 - HP15_1764 0.29 -2.6 1,862,312 - HP15_1764 0.35 -0.6
Or see this region's nucleotide sequence