Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1717 and HP15_1718 are separated by 187 nucleotides HP15_1718 and HP15_1719 are separated by 5 nucleotides HP15_1719 and HP15_1720 are separated by 25 nucleotides HP15_1720 and HP15_1721 are separated by 47 nucleotides
HP15_1717: HP15_1717 - phospholipid/glycerol acyltransferase, at 1,815,028 to 1,816,254
_1717
HP15_1718: HP15_1718 - ATP-dependent DNA helicase RecQ, at 1,816,442 to 1,818,310
_1718
HP15_1719: HP15_1719 - conserved hypothetical protein, at 1,818,316 to 1,818,828
_1719
HP15_1720: HP15_1720 - hypothetical protein, at 1,818,854 to 1,819,009
_1720
HP15_1721: HP15_1721 - conserved hypothetical protein, secreted, at 1,819,057 to 1,820,013
_1721
Position (kb)
1816
1817
1818
1819 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1816.297 kb on - strand at 1816.402 kb on + strand at 1816.410 kb on - strand at 1816.410 kb on - strand at 1816.468 kb on + strand at 1816.468 kb on + strand at 1816.468 kb on + strand at 1816.476 kb on - strand at 1816.668 kb on - strand, within HP15_1718 at 1816.735 kb on + strand, within HP15_1718 at 1816.785 kb on - strand, within HP15_1718 at 1816.785 kb on - strand, within HP15_1718 at 1816.820 kb on + strand, within HP15_1718 at 1816.820 kb on + strand, within HP15_1718 at 1816.828 kb on - strand, within HP15_1718 at 1816.833 kb on - strand, within HP15_1718 at 1816.989 kb on - strand, within HP15_1718 at 1817.098 kb on + strand, within HP15_1718 at 1817.105 kb on + strand, within HP15_1718 at 1817.283 kb on + strand, within HP15_1718 at 1817.457 kb on - strand, within HP15_1718 at 1817.467 kb on + strand, within HP15_1718 at 1817.470 kb on + strand, within HP15_1718 at 1817.540 kb on - strand, within HP15_1718 at 1817.892 kb on + strand, within HP15_1718 at 1817.975 kb on - strand, within HP15_1718 at 1818.304 kb on + strand at 1818.334 kb on - strand at 1818.691 kb on - strand, within HP15_1719 at 1818.693 kb on + strand, within HP15_1719 at 1818.693 kb on + strand, within HP15_1719 at 1818.693 kb on + strand, within HP15_1719 at 1818.707 kb on - strand, within HP15_1719 at 1818.779 kb on + strand at 1818.792 kb on - strand at 1818.801 kb on + strand at 1818.801 kb on + strand at 1818.804 kb on - strand at 1818.814 kb on - strand at 1818.818 kb on + strand at 1818.828 kb on + strand at 1818.836 kb on - strand at 1818.926 kb on + strand, within HP15_1720 at 1819.004 kb on + strand at 1819.150 kb on - strand at 1819.175 kb on - strand, within HP15_1721 at 1819.292 kb on - strand, within HP15_1721
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 1,816,297 - +0.1 1,816,402 + +0.1 1,816,410 - -1.0 1,816,410 - +0.8 1,816,468 + -3.5 1,816,468 + -0.0 1,816,468 + +0.4 1,816,476 - +0.7 1,816,668 - HP15_1718 0.12 -0.1 1,816,735 + HP15_1718 0.16 -0.2 1,816,785 - HP15_1718 0.18 +1.0 1,816,785 - HP15_1718 0.18 -1.8 1,816,820 + HP15_1718 0.20 -0.2 1,816,820 + HP15_1718 0.20 +1.2 1,816,828 - HP15_1718 0.21 +0.8 1,816,833 - HP15_1718 0.21 +0.4 1,816,989 - HP15_1718 0.29 -0.1 1,817,098 + HP15_1718 0.35 +1.3 1,817,105 + HP15_1718 0.35 +0.3 1,817,283 + HP15_1718 0.45 +0.1 1,817,457 - HP15_1718 0.54 +0.2 1,817,467 + HP15_1718 0.55 +0.6 1,817,470 + HP15_1718 0.55 +0.8 1,817,540 - HP15_1718 0.59 -1.5 1,817,892 + HP15_1718 0.78 +0.3 1,817,975 - HP15_1718 0.82 +1.0 1,818,304 + +0.5 1,818,334 - +0.5 1,818,691 - HP15_1719 0.73 -1.7 1,818,693 + HP15_1719 0.73 -2.0 1,818,693 + HP15_1719 0.73 +0.1 1,818,693 + HP15_1719 0.73 -0.6 1,818,707 - HP15_1719 0.76 +0.5 1,818,779 + +0.7 1,818,792 - +0.3 1,818,801 + -0.6 1,818,801 + -0.2 1,818,804 - +0.2 1,818,814 - -1.0 1,818,818 + -0.0 1,818,828 + -2.6 1,818,836 - +0.6 1,818,926 + HP15_1720 0.46 -0.6 1,819,004 + -2.4 1,819,150 - +0.1 1,819,175 - HP15_1721 0.12 +1.7 1,819,292 - HP15_1721 0.25 -0.9
Or see this region's nucleotide sequence