Strain Fitness in Marinobacter adhaerens HP15 around HP15_1718

Experiment: Control growth in Pro99_seawater

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1717 and HP15_1718 are separated by 187 nucleotidesHP15_1718 and HP15_1719 are separated by 5 nucleotidesHP15_1719 and HP15_1720 are separated by 25 nucleotidesHP15_1720 and HP15_1721 are separated by 47 nucleotides HP15_1717: HP15_1717 - phospholipid/glycerol acyltransferase, at 1,815,028 to 1,816,254 _1717 HP15_1718: HP15_1718 - ATP-dependent DNA helicase RecQ, at 1,816,442 to 1,818,310 _1718 HP15_1719: HP15_1719 - conserved hypothetical protein, at 1,818,316 to 1,818,828 _1719 HP15_1720: HP15_1720 - hypothetical protein, at 1,818,854 to 1,819,009 _1720 HP15_1721: HP15_1721 - conserved hypothetical protein, secreted, at 1,819,057 to 1,820,013 _1721 Position (kb) 1816 1817 1818 1819Strain fitness (log2 ratio) -3 -2 -1 0 1at 1816.297 kb on - strandat 1816.402 kb on + strandat 1816.410 kb on - strandat 1816.410 kb on - strandat 1816.468 kb on + strandat 1816.468 kb on + strandat 1816.468 kb on + strandat 1816.476 kb on - strandat 1816.668 kb on - strand, within HP15_1718at 1816.735 kb on + strand, within HP15_1718at 1816.785 kb on - strand, within HP15_1718at 1816.785 kb on - strand, within HP15_1718at 1816.820 kb on + strand, within HP15_1718at 1816.820 kb on + strand, within HP15_1718at 1816.828 kb on - strand, within HP15_1718at 1816.833 kb on - strand, within HP15_1718at 1816.989 kb on - strand, within HP15_1718at 1817.098 kb on + strand, within HP15_1718at 1817.105 kb on + strand, within HP15_1718at 1817.283 kb on + strand, within HP15_1718at 1817.457 kb on - strand, within HP15_1718at 1817.467 kb on + strand, within HP15_1718at 1817.470 kb on + strand, within HP15_1718at 1817.540 kb on - strand, within HP15_1718at 1817.892 kb on + strand, within HP15_1718at 1817.975 kb on - strand, within HP15_1718at 1818.304 kb on + strandat 1818.334 kb on - strandat 1818.691 kb on - strand, within HP15_1719at 1818.693 kb on + strand, within HP15_1719at 1818.693 kb on + strand, within HP15_1719at 1818.693 kb on + strand, within HP15_1719at 1818.707 kb on - strand, within HP15_1719at 1818.779 kb on + strandat 1818.792 kb on - strandat 1818.801 kb on + strandat 1818.801 kb on + strandat 1818.804 kb on - strandat 1818.814 kb on - strandat 1818.818 kb on + strandat 1818.828 kb on + strandat 1818.836 kb on - strandat 1818.926 kb on + strand, within HP15_1720at 1819.004 kb on + strandat 1819.150 kb on - strandat 1819.175 kb on - strand, within HP15_1721at 1819.292 kb on - strand, within HP15_1721

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Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
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1,816,297 - +0.1
1,816,402 + +0.1
1,816,410 - -1.0
1,816,410 - +0.8
1,816,468 + -3.5
1,816,468 + -0.0
1,816,468 + +0.4
1,816,476 - +0.7
1,816,668 - HP15_1718 0.12 -0.1
1,816,735 + HP15_1718 0.16 -0.2
1,816,785 - HP15_1718 0.18 +1.0
1,816,785 - HP15_1718 0.18 -1.8
1,816,820 + HP15_1718 0.20 -0.2
1,816,820 + HP15_1718 0.20 +1.2
1,816,828 - HP15_1718 0.21 +0.8
1,816,833 - HP15_1718 0.21 +0.4
1,816,989 - HP15_1718 0.29 -0.1
1,817,098 + HP15_1718 0.35 +1.3
1,817,105 + HP15_1718 0.35 +0.3
1,817,283 + HP15_1718 0.45 +0.1
1,817,457 - HP15_1718 0.54 +0.2
1,817,467 + HP15_1718 0.55 +0.6
1,817,470 + HP15_1718 0.55 +0.8
1,817,540 - HP15_1718 0.59 -1.5
1,817,892 + HP15_1718 0.78 +0.3
1,817,975 - HP15_1718 0.82 +1.0
1,818,304 + +0.5
1,818,334 - +0.5
1,818,691 - HP15_1719 0.73 -1.7
1,818,693 + HP15_1719 0.73 -2.0
1,818,693 + HP15_1719 0.73 +0.1
1,818,693 + HP15_1719 0.73 -0.6
1,818,707 - HP15_1719 0.76 +0.5
1,818,779 + +0.7
1,818,792 - +0.3
1,818,801 + -0.6
1,818,801 + -0.2
1,818,804 - +0.2
1,818,814 - -1.0
1,818,818 + -0.0
1,818,828 + -2.6
1,818,836 - +0.6
1,818,926 + HP15_1720 0.46 -0.6
1,819,004 + -2.4
1,819,150 - +0.1
1,819,175 - HP15_1721 0.12 +1.7
1,819,292 - HP15_1721 0.25 -0.9

Or see this region's nucleotide sequence