Strain Fitness in Marinobacter adhaerens HP15 around HP15_1573

Experiment: Control growth in Pro99_seawater

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1572 and HP15_tRNA31 are separated by 224 nucleotidesHP15_tRNA31 and HP15_tRNA32 are separated by 60 nucleotidesHP15_tRNA32 and HP15_1573 are separated by 168 nucleotidesHP15_1573 and HP15_1574 are separated by 10 nucleotides HP15_1572: HP15_1572 - ABC transporter, permease protein, at 1,652,431 to 1,653,597 _1572 HP15_tRNA31: HP15_tRNA31 - tRNA-Gly, at 1,653,822 to 1,653,897 _tRNA31 HP15_tRNA32: HP15_tRNA32 - tRNA-Cys, at 1,653,958 to 1,654,031 _tRNA32 HP15_1573: HP15_1573 - formate dehydrogenase, beta subunit, at 1,654,200 to 1,655,915 _1573 HP15_1574: HP15_1574 - formate dehydrogenase, alpha subunit, at 1,655,926 to 1,658,817 _1574 Position (kb) 1654 1655 1656Strain fitness (log2 ratio) -3 -2 -1 0 1at 1653.231 kb on + strand, within HP15_1572at 1653.530 kb on - strandat 1653.582 kb on + strandat 1653.582 kb on + strandat 1653.590 kb on - strandat 1653.646 kb on - strandat 1654.562 kb on + strand, within HP15_1573at 1654.562 kb on + strand, within HP15_1573at 1654.582 kb on + strand, within HP15_1573at 1654.593 kb on + strand, within HP15_1573at 1654.593 kb on + strand, within HP15_1573at 1654.601 kb on - strand, within HP15_1573at 1654.601 kb on - strand, within HP15_1573at 1654.601 kb on - strand, within HP15_1573at 1654.730 kb on - strand, within HP15_1573at 1654.947 kb on + strand, within HP15_1573at 1654.987 kb on - strand, within HP15_1573at 1654.998 kb on - strand, within HP15_1573at 1655.055 kb on + strand, within HP15_1573at 1655.292 kb on - strand, within HP15_1573at 1655.455 kb on + strand, within HP15_1573at 1655.455 kb on + strand, within HP15_1573at 1655.455 kb on + strand, within HP15_1573at 1655.463 kb on - strand, within HP15_1573at 1655.463 kb on - strand, within HP15_1573at 1655.492 kb on + strand, within HP15_1573at 1655.499 kb on + strand, within HP15_1573at 1655.603 kb on - strand, within HP15_1573at 1655.634 kb on - strand, within HP15_1573at 1655.708 kb on + strand, within HP15_1573at 1655.716 kb on - strand, within HP15_1573at 1655.880 kb on + strandat 1655.898 kb on - strandat 1655.918 kb on - strandat 1656.011 kb on + strandat 1656.364 kb on - strand, within HP15_1574at 1656.484 kb on - strand, within HP15_1574at 1656.500 kb on + strand, within HP15_1574at 1656.538 kb on - strand, within HP15_1574at 1656.538 kb on - strand, within HP15_1574at 1656.587 kb on - strand, within HP15_1574at 1656.673 kb on - strand, within HP15_1574at 1656.725 kb on + strand, within HP15_1574at 1656.756 kb on + strand, within HP15_1574at 1656.825 kb on + strand, within HP15_1574at 1656.833 kb on - strand, within HP15_1574at 1656.839 kb on + strand, within HP15_1574at 1656.847 kb on - strand, within HP15_1574at 1656.852 kb on - strand, within HP15_1574

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Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
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1,653,231 + HP15_1572 0.69 +0.0
1,653,530 - +0.5
1,653,582 + +0.6
1,653,582 + -0.1
1,653,590 - -0.4
1,653,646 - +0.3
1,654,562 + HP15_1573 0.21 -0.2
1,654,562 + HP15_1573 0.21 +0.7
1,654,582 + HP15_1573 0.22 -3.0
1,654,593 + HP15_1573 0.23 +0.4
1,654,593 + HP15_1573 0.23 -3.4
1,654,601 - HP15_1573 0.23 -0.4
1,654,601 - HP15_1573 0.23 -1.4
1,654,601 - HP15_1573 0.23 -1.4
1,654,730 - HP15_1573 0.31 +0.6
1,654,947 + HP15_1573 0.44 +0.7
1,654,987 - HP15_1573 0.46 -2.7
1,654,998 - HP15_1573 0.47 +0.8
1,655,055 + HP15_1573 0.50 -0.3
1,655,292 - HP15_1573 0.64 -2.6
1,655,455 + HP15_1573 0.73 -3.1
1,655,455 + HP15_1573 0.73 -0.2
1,655,455 + HP15_1573 0.73 -2.9
1,655,463 - HP15_1573 0.74 +0.5
1,655,463 - HP15_1573 0.74 +1.3
1,655,492 + HP15_1573 0.75 -2.1
1,655,499 + HP15_1573 0.76 +0.2
1,655,603 - HP15_1573 0.82 +0.8
1,655,634 - HP15_1573 0.84 -3.3
1,655,708 + HP15_1573 0.88 +0.9
1,655,716 - HP15_1573 0.88 +0.3
1,655,880 + -0.1
1,655,898 - +0.6
1,655,918 - -0.2
1,656,011 + -0.3
1,656,364 - HP15_1574 0.15 -0.0
1,656,484 - HP15_1574 0.19 +0.1
1,656,500 + HP15_1574 0.20 +0.5
1,656,538 - HP15_1574 0.21 +0.2
1,656,538 - HP15_1574 0.21 +0.8
1,656,587 - HP15_1574 0.23 -3.0
1,656,673 - HP15_1574 0.26 +0.0
1,656,725 + HP15_1574 0.28 +0.4
1,656,756 + HP15_1574 0.29 -2.3
1,656,825 + HP15_1574 0.31 -0.2
1,656,833 - HP15_1574 0.31 +0.1
1,656,839 + HP15_1574 0.32 +0.7
1,656,847 - HP15_1574 0.32 +0.2
1,656,852 - HP15_1574 0.32 -2.9

Or see this region's nucleotide sequence