Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1572 and HP15_tRNA31 are separated by 224 nucleotides HP15_tRNA31 and HP15_tRNA32 are separated by 60 nucleotides HP15_tRNA32 and HP15_1573 are separated by 168 nucleotides HP15_1573 and HP15_1574 are separated by 10 nucleotides
HP15_1572: HP15_1572 - ABC transporter, permease protein, at 1,652,431 to 1,653,597
_1572
HP15_tRNA31: HP15_tRNA31 - tRNA-Gly, at 1,653,822 to 1,653,897
_tRNA31
HP15_tRNA32: HP15_tRNA32 - tRNA-Cys, at 1,653,958 to 1,654,031
_tRNA32
HP15_1573: HP15_1573 - formate dehydrogenase, beta subunit, at 1,654,200 to 1,655,915
_1573
HP15_1574: HP15_1574 - formate dehydrogenase, alpha subunit, at 1,655,926 to 1,658,817
_1574
Position (kb)
1654
1655
1656 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1653.231 kb on + strand, within HP15_1572 at 1653.530 kb on - strand at 1653.582 kb on + strand at 1653.582 kb on + strand at 1653.590 kb on - strand at 1653.646 kb on - strand at 1654.562 kb on + strand, within HP15_1573 at 1654.562 kb on + strand, within HP15_1573 at 1654.582 kb on + strand, within HP15_1573 at 1654.593 kb on + strand, within HP15_1573 at 1654.593 kb on + strand, within HP15_1573 at 1654.601 kb on - strand, within HP15_1573 at 1654.601 kb on - strand, within HP15_1573 at 1654.601 kb on - strand, within HP15_1573 at 1654.730 kb on - strand, within HP15_1573 at 1654.947 kb on + strand, within HP15_1573 at 1654.987 kb on - strand, within HP15_1573 at 1654.998 kb on - strand, within HP15_1573 at 1655.055 kb on + strand, within HP15_1573 at 1655.292 kb on - strand, within HP15_1573 at 1655.455 kb on + strand, within HP15_1573 at 1655.455 kb on + strand, within HP15_1573 at 1655.455 kb on + strand, within HP15_1573 at 1655.463 kb on - strand, within HP15_1573 at 1655.463 kb on - strand, within HP15_1573 at 1655.492 kb on + strand, within HP15_1573 at 1655.499 kb on + strand, within HP15_1573 at 1655.603 kb on - strand, within HP15_1573 at 1655.634 kb on - strand, within HP15_1573 at 1655.708 kb on + strand, within HP15_1573 at 1655.716 kb on - strand, within HP15_1573 at 1655.880 kb on + strand at 1655.898 kb on - strand at 1655.918 kb on - strand at 1656.011 kb on + strand at 1656.364 kb on - strand, within HP15_1574 at 1656.484 kb on - strand, within HP15_1574 at 1656.500 kb on + strand, within HP15_1574 at 1656.538 kb on - strand, within HP15_1574 at 1656.538 kb on - strand, within HP15_1574 at 1656.587 kb on - strand, within HP15_1574 at 1656.673 kb on - strand, within HP15_1574 at 1656.725 kb on + strand, within HP15_1574 at 1656.756 kb on + strand, within HP15_1574 at 1656.825 kb on + strand, within HP15_1574 at 1656.833 kb on - strand, within HP15_1574 at 1656.839 kb on + strand, within HP15_1574 at 1656.847 kb on - strand, within HP15_1574 at 1656.852 kb on - strand, within HP15_1574
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 1,653,231 + HP15_1572 0.69 +0.0 1,653,530 - +0.5 1,653,582 + +0.6 1,653,582 + -0.1 1,653,590 - -0.4 1,653,646 - +0.3 1,654,562 + HP15_1573 0.21 -0.2 1,654,562 + HP15_1573 0.21 +0.7 1,654,582 + HP15_1573 0.22 -3.0 1,654,593 + HP15_1573 0.23 +0.4 1,654,593 + HP15_1573 0.23 -3.4 1,654,601 - HP15_1573 0.23 -0.4 1,654,601 - HP15_1573 0.23 -1.4 1,654,601 - HP15_1573 0.23 -1.4 1,654,730 - HP15_1573 0.31 +0.6 1,654,947 + HP15_1573 0.44 +0.7 1,654,987 - HP15_1573 0.46 -2.7 1,654,998 - HP15_1573 0.47 +0.8 1,655,055 + HP15_1573 0.50 -0.3 1,655,292 - HP15_1573 0.64 -2.6 1,655,455 + HP15_1573 0.73 -3.1 1,655,455 + HP15_1573 0.73 -0.2 1,655,455 + HP15_1573 0.73 -2.9 1,655,463 - HP15_1573 0.74 +0.5 1,655,463 - HP15_1573 0.74 +1.3 1,655,492 + HP15_1573 0.75 -2.1 1,655,499 + HP15_1573 0.76 +0.2 1,655,603 - HP15_1573 0.82 +0.8 1,655,634 - HP15_1573 0.84 -3.3 1,655,708 + HP15_1573 0.88 +0.9 1,655,716 - HP15_1573 0.88 +0.3 1,655,880 + -0.1 1,655,898 - +0.6 1,655,918 - -0.2 1,656,011 + -0.3 1,656,364 - HP15_1574 0.15 -0.0 1,656,484 - HP15_1574 0.19 +0.1 1,656,500 + HP15_1574 0.20 +0.5 1,656,538 - HP15_1574 0.21 +0.2 1,656,538 - HP15_1574 0.21 +0.8 1,656,587 - HP15_1574 0.23 -3.0 1,656,673 - HP15_1574 0.26 +0.0 1,656,725 + HP15_1574 0.28 +0.4 1,656,756 + HP15_1574 0.29 -2.3 1,656,825 + HP15_1574 0.31 -0.2 1,656,833 - HP15_1574 0.31 +0.1 1,656,839 + HP15_1574 0.32 +0.7 1,656,847 - HP15_1574 0.32 +0.2 1,656,852 - HP15_1574 0.32 -2.9
Or see this region's nucleotide sequence