Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1511 and HP15_1512 are separated by 436 nucleotides HP15_1512 and HP15_1513 are separated by 84 nucleotides
HP15_1511: HP15_1511 - conserved hypothetical protein, secreted, at 1,587,161 to 1,587,979
_1511
HP15_1512: HP15_1512 - Enoyl-CoA hydratase (EC 4.2.1.17) (from data) , at 1,588,416 to 1,590,563
_1512
HP15_1513: HP15_1513 - Acetyl-CoA C-acyltransferase (EC 2.3.1.16) (from data) , at 1,590,648 to 1,591,772
_1513
Position (kb)
1588
1589
1590
1591 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1587.435 kb on - strand, within HP15_1511 at 1587.441 kb on + strand, within HP15_1511 at 1587.444 kb on - strand, within HP15_1511 at 1587.543 kb on + strand, within HP15_1511 at 1587.561 kb on - strand, within HP15_1511 at 1587.647 kb on - strand, within HP15_1511 at 1587.783 kb on - strand, within HP15_1511 at 1587.792 kb on + strand, within HP15_1511 at 1587.838 kb on - strand, within HP15_1511 at 1587.838 kb on - strand, within HP15_1511 at 1587.893 kb on + strand, within HP15_1511 at 1587.893 kb on + strand, within HP15_1511 at 1588.322 kb on - strand at 1588.386 kb on - strand at 1588.402 kb on + strand at 1588.428 kb on + strand at 1588.428 kb on + strand at 1588.449 kb on - strand at 1588.532 kb on + strand at 1588.571 kb on + strand at 1588.700 kb on + strand, within HP15_1512 at 1588.708 kb on - strand, within HP15_1512 at 1588.740 kb on - strand, within HP15_1512 at 1588.827 kb on - strand, within HP15_1512 at 1588.828 kb on + strand, within HP15_1512 at 1588.929 kb on + strand, within HP15_1512 at 1589.005 kb on - strand, within HP15_1512 at 1589.083 kb on - strand, within HP15_1512 at 1589.095 kb on - strand, within HP15_1512 at 1589.193 kb on - strand, within HP15_1512 at 1589.267 kb on - strand, within HP15_1512 at 1589.324 kb on + strand, within HP15_1512 at 1589.333 kb on - strand, within HP15_1512 at 1589.415 kb on + strand, within HP15_1512 at 1589.506 kb on - strand, within HP15_1512 at 1589.753 kb on + strand, within HP15_1512 at 1589.778 kb on - strand, within HP15_1512 at 1589.858 kb on + strand, within HP15_1512 at 1590.042 kb on - strand, within HP15_1512 at 1590.429 kb on - strand at 1590.481 kb on + strand at 1590.491 kb on + strand at 1590.600 kb on - strand at 1590.601 kb on + strand at 1590.645 kb on + strand at 1590.653 kb on - strand at 1590.728 kb on - strand at 1590.741 kb on - strand at 1590.768 kb on + strand, within HP15_1513 at 1590.786 kb on - strand, within HP15_1513 at 1590.795 kb on + strand, within HP15_1513 at 1590.973 kb on - strand, within HP15_1513 at 1591.103 kb on + strand, within HP15_1513 at 1591.204 kb on + strand, within HP15_1513 at 1591.255 kb on - strand, within HP15_1513 at 1591.358 kb on + strand, within HP15_1513 at 1591.487 kb on - strand, within HP15_1513 at 1591.487 kb on - strand, within HP15_1513 at 1591.550 kb on + strand, within HP15_1513
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 1,587,435 - HP15_1511 0.33 +0.7 1,587,441 + HP15_1511 0.34 -0.1 1,587,444 - HP15_1511 0.35 -0.6 1,587,543 + HP15_1511 0.47 -0.0 1,587,561 - HP15_1511 0.49 +1.0 1,587,647 - HP15_1511 0.59 +0.7 1,587,783 - HP15_1511 0.76 +0.5 1,587,792 + HP15_1511 0.77 -0.2 1,587,838 - HP15_1511 0.83 -1.4 1,587,838 - HP15_1511 0.83 -1.6 1,587,893 + HP15_1511 0.89 +1.3 1,587,893 + HP15_1511 0.89 -2.2 1,588,322 - -1.3 1,588,386 - +0.3 1,588,402 + -0.7 1,588,428 + +0.7 1,588,428 + +0.0 1,588,449 - -0.2 1,588,532 + +0.8 1,588,571 + +0.3 1,588,700 + HP15_1512 0.13 -0.6 1,588,708 - HP15_1512 0.14 -0.6 1,588,740 - HP15_1512 0.15 -2.9 1,588,827 - HP15_1512 0.19 +0.3 1,588,828 + HP15_1512 0.19 -0.3 1,588,929 + HP15_1512 0.24 -1.8 1,589,005 - HP15_1512 0.27 +0.5 1,589,083 - HP15_1512 0.31 +0.4 1,589,095 - HP15_1512 0.32 +0.0 1,589,193 - HP15_1512 0.36 -0.6 1,589,267 - HP15_1512 0.40 -3.4 1,589,324 + HP15_1512 0.42 -0.5 1,589,333 - HP15_1512 0.43 +0.4 1,589,415 + HP15_1512 0.47 -2.9 1,589,506 - HP15_1512 0.51 -2.0 1,589,753 + HP15_1512 0.62 -0.4 1,589,778 - HP15_1512 0.63 -0.3 1,589,858 + HP15_1512 0.67 -4.3 1,590,042 - HP15_1512 0.76 -0.9 1,590,429 - -3.1 1,590,481 + -0.8 1,590,491 + +0.3 1,590,600 - +0.1 1,590,601 + -2.4 1,590,645 + -2.1 1,590,653 - -1.8 1,590,728 - -1.6 1,590,741 - +0.6 1,590,768 + HP15_1513 0.11 +0.4 1,590,786 - HP15_1513 0.12 -3.0 1,590,795 + HP15_1513 0.13 +0.5 1,590,973 - HP15_1513 0.29 -2.9 1,591,103 + HP15_1513 0.40 +0.2 1,591,204 + HP15_1513 0.49 -0.4 1,591,255 - HP15_1513 0.54 +0.1 1,591,358 + HP15_1513 0.63 -1.3 1,591,487 - HP15_1513 0.75 +0.4 1,591,487 - HP15_1513 0.75 +0.3 1,591,550 + HP15_1513 0.80 -0.1
Or see this region's nucleotide sequence