Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1414 and HP15_1415 are separated by 10 nucleotides HP15_1415 and HP15_1416 are separated by 635 nucleotides
HP15_1414: HP15_1414 - histone deacetylase superfamily protein, at 1,493,804 to 1,494,910
_1414
HP15_1415: HP15_1415 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s), at 1,494,921 to 1,497,551
_1415
HP15_1416: HP15_1416 - L-carnitine dehydratase/bile acid-inducible protein F, at 1,498,187 to 1,499,392
_1416
Position (kb)
1494
1495
1496
1497
1498 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1493.954 kb on - strand, within HP15_1414 at 1493.973 kb on - strand, within HP15_1414 at 1494.072 kb on + strand, within HP15_1414 at 1494.162 kb on - strand, within HP15_1414 at 1494.331 kb on + strand, within HP15_1414 at 1494.353 kb on + strand, within HP15_1414 at 1494.361 kb on - strand, within HP15_1414 at 1494.489 kb on + strand, within HP15_1414 at 1494.497 kb on - strand, within HP15_1414 at 1494.499 kb on + strand, within HP15_1414 at 1494.502 kb on - strand, within HP15_1414 at 1494.505 kb on + strand, within HP15_1414 at 1494.583 kb on - strand, within HP15_1414 at 1494.656 kb on + strand, within HP15_1414 at 1494.664 kb on - strand, within HP15_1414 at 1494.730 kb on - strand, within HP15_1414 at 1494.778 kb on + strand, within HP15_1414 at 1494.778 kb on + strand, within HP15_1414 at 1494.786 kb on - strand, within HP15_1414 at 1494.786 kb on - strand, within HP15_1414 at 1494.786 kb on - strand, within HP15_1414 at 1494.786 kb on - strand, within HP15_1414 at 1494.786 kb on - strand, within HP15_1414 at 1494.786 kb on - strand, within HP15_1414 at 1494.786 kb on - strand, within HP15_1414 at 1494.786 kb on - strand, within HP15_1414 at 1494.877 kb on + strand at 1494.907 kb on - strand at 1495.058 kb on + strand at 1495.187 kb on + strand, within HP15_1415 at 1495.195 kb on - strand, within HP15_1415 at 1495.237 kb on - strand, within HP15_1415 at 1495.237 kb on - strand, within HP15_1415 at 1495.315 kb on - strand, within HP15_1415 at 1495.484 kb on - strand, within HP15_1415 at 1495.524 kb on - strand, within HP15_1415 at 1495.529 kb on - strand, within HP15_1415 at 1495.538 kb on + strand, within HP15_1415 at 1495.556 kb on - strand, within HP15_1415 at 1495.560 kb on + strand, within HP15_1415 at 1495.566 kb on - strand, within HP15_1415 at 1495.679 kb on - strand, within HP15_1415 at 1495.679 kb on - strand, within HP15_1415 at 1495.727 kb on - strand, within HP15_1415 at 1495.842 kb on - strand, within HP15_1415 at 1495.945 kb on + strand, within HP15_1415 at 1496.017 kb on - strand, within HP15_1415 at 1496.038 kb on - strand, within HP15_1415 at 1496.145 kb on - strand, within HP15_1415 at 1496.180 kb on - strand, within HP15_1415 at 1496.312 kb on - strand, within HP15_1415 at 1496.604 kb on - strand, within HP15_1415 at 1496.611 kb on - strand, within HP15_1415 at 1496.634 kb on + strand, within HP15_1415 at 1496.635 kb on - strand, within HP15_1415 at 1496.667 kb on + strand, within HP15_1415 at 1496.667 kb on + strand, within HP15_1415 at 1496.675 kb on - strand, within HP15_1415 at 1496.713 kb on + strand, within HP15_1415 at 1496.713 kb on + strand, within HP15_1415 at 1496.713 kb on + strand, within HP15_1415 at 1496.713 kb on + strand, within HP15_1415 at 1496.713 kb on + strand, within HP15_1415 at 1496.721 kb on - strand, within HP15_1415 at 1496.721 kb on - strand, within HP15_1415 at 1496.731 kb on - strand, within HP15_1415 at 1496.859 kb on + strand, within HP15_1415 at 1496.896 kb on - strand, within HP15_1415 at 1497.017 kb on + strand, within HP15_1415 at 1497.056 kb on - strand, within HP15_1415 at 1497.082 kb on - strand, within HP15_1415 at 1497.161 kb on + strand, within HP15_1415 at 1497.161 kb on - strand, within HP15_1415 at 1497.168 kb on + strand, within HP15_1415 at 1497.242 kb on - strand, within HP15_1415 at 1497.242 kb on - strand, within HP15_1415 at 1497.294 kb on + strand at 1497.299 kb on + strand at 1497.304 kb on + strand at 1497.328 kb on + strand at 1497.414 kb on + strand at 1497.419 kb on + strand at 1497.422 kb on - strand at 1497.422 kb on - strand at 1497.427 kb on - strand at 1497.495 kb on - strand at 1497.521 kb on + strand at 1497.541 kb on - strand at 1497.567 kb on + strand at 1497.899 kb on + strand at 1498.029 kb on + strand at 1498.131 kb on + strand at 1498.316 kb on + strand, within HP15_1416 at 1498.374 kb on + strand, within HP15_1416 at 1498.382 kb on - strand, within HP15_1416 at 1498.463 kb on + strand, within HP15_1416
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 1,493,954 - HP15_1414 0.14 -0.3 1,493,973 - HP15_1414 0.15 +0.4 1,494,072 + HP15_1414 0.24 -0.1 1,494,162 - HP15_1414 0.32 -0.1 1,494,331 + HP15_1414 0.48 -1.0 1,494,353 + HP15_1414 0.50 +0.3 1,494,361 - HP15_1414 0.50 +0.3 1,494,489 + HP15_1414 0.62 +0.6 1,494,497 - HP15_1414 0.63 +1.0 1,494,499 + HP15_1414 0.63 -0.8 1,494,502 - HP15_1414 0.63 -1.8 1,494,505 + HP15_1414 0.63 -0.8 1,494,583 - HP15_1414 0.70 +0.6 1,494,656 + HP15_1414 0.77 -0.8 1,494,664 - HP15_1414 0.78 +0.7 1,494,730 - HP15_1414 0.84 -0.7 1,494,778 + HP15_1414 0.88 +0.6 1,494,778 + HP15_1414 0.88 -0.9 1,494,786 - HP15_1414 0.89 -0.3 1,494,786 - HP15_1414 0.89 +0.7 1,494,786 - HP15_1414 0.89 +0.3 1,494,786 - HP15_1414 0.89 +1.0 1,494,786 - HP15_1414 0.89 +0.7 1,494,786 - HP15_1414 0.89 +0.4 1,494,786 - HP15_1414 0.89 -1.4 1,494,786 - HP15_1414 0.89 +0.2 1,494,877 + +0.4 1,494,907 - -0.1 1,495,058 + +0.5 1,495,187 + HP15_1415 0.10 +0.1 1,495,195 - HP15_1415 0.10 +0.0 1,495,237 - HP15_1415 0.12 -4.3 1,495,237 - HP15_1415 0.12 -2.7 1,495,315 - HP15_1415 0.15 -1.2 1,495,484 - HP15_1415 0.21 +0.3 1,495,524 - HP15_1415 0.23 +0.1 1,495,529 - HP15_1415 0.23 +0.2 1,495,538 + HP15_1415 0.23 -3.1 1,495,556 - HP15_1415 0.24 +0.7 1,495,560 + HP15_1415 0.24 -2.6 1,495,566 - HP15_1415 0.25 -2.6 1,495,679 - HP15_1415 0.29 +1.2 1,495,679 - HP15_1415 0.29 +0.1 1,495,727 - HP15_1415 0.31 +0.8 1,495,842 - HP15_1415 0.35 -0.6 1,495,945 + HP15_1415 0.39 -3.4 1,496,017 - HP15_1415 0.42 -0.1 1,496,038 - HP15_1415 0.42 -0.5 1,496,145 - HP15_1415 0.47 -1.8 1,496,180 - HP15_1415 0.48 -4.6 1,496,312 - HP15_1415 0.53 -2.2 1,496,604 - HP15_1415 0.64 -1.9 1,496,611 - HP15_1415 0.64 +0.3 1,496,634 + HP15_1415 0.65 +0.2 1,496,635 - HP15_1415 0.65 -0.2 1,496,667 + HP15_1415 0.66 +0.4 1,496,667 + HP15_1415 0.66 -0.8 1,496,675 - HP15_1415 0.67 -2.5 1,496,713 + HP15_1415 0.68 +0.2 1,496,713 + HP15_1415 0.68 -3.6 1,496,713 + HP15_1415 0.68 +0.8 1,496,713 + HP15_1415 0.68 +0.1 1,496,713 + HP15_1415 0.68 +0.6 1,496,721 - HP15_1415 0.68 +0.0 1,496,721 - HP15_1415 0.68 +0.5 1,496,731 - HP15_1415 0.69 +0.2 1,496,859 + HP15_1415 0.74 -0.6 1,496,896 - HP15_1415 0.75 +0.3 1,497,017 + HP15_1415 0.80 -2.5 1,497,056 - HP15_1415 0.81 -1.1 1,497,082 - HP15_1415 0.82 -0.7 1,497,161 + HP15_1415 0.85 -0.5 1,497,161 - HP15_1415 0.85 -1.3 1,497,168 + HP15_1415 0.85 +0.3 1,497,242 - HP15_1415 0.88 -0.3 1,497,242 - HP15_1415 0.88 -2.8 1,497,294 + +0.2 1,497,299 + +0.0 1,497,304 + +1.6 1,497,328 + +0.2 1,497,414 + -2.6 1,497,419 + -0.1 1,497,422 - +0.8 1,497,422 - -0.1 1,497,427 - -2.0 1,497,495 - -2.8 1,497,521 + -0.2 1,497,541 - -3.6 1,497,567 + +0.1 1,497,899 + -0.1 1,498,029 + -0.5 1,498,131 + -2.1 1,498,316 + HP15_1416 0.11 +0.1 1,498,374 + HP15_1416 0.16 +0.9 1,498,382 - HP15_1416 0.16 -1.1 1,498,463 + HP15_1416 0.23 -0.2
Or see this region's nucleotide sequence