Strain Fitness in Marinobacter adhaerens HP15 around HP15_1415

Experiment: Control growth in Pro99_seawater

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1414 and HP15_1415 are separated by 10 nucleotidesHP15_1415 and HP15_1416 are separated by 635 nucleotides HP15_1414: HP15_1414 - histone deacetylase superfamily protein, at 1,493,804 to 1,494,910 _1414 HP15_1415: HP15_1415 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s), at 1,494,921 to 1,497,551 _1415 HP15_1416: HP15_1416 - L-carnitine dehydratase/bile acid-inducible protein F, at 1,498,187 to 1,499,392 _1416 Position (kb) 1494 1495 1496 1497 1498Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1493.954 kb on - strand, within HP15_1414at 1493.973 kb on - strand, within HP15_1414at 1494.072 kb on + strand, within HP15_1414at 1494.162 kb on - strand, within HP15_1414at 1494.331 kb on + strand, within HP15_1414at 1494.353 kb on + strand, within HP15_1414at 1494.361 kb on - strand, within HP15_1414at 1494.489 kb on + strand, within HP15_1414at 1494.497 kb on - strand, within HP15_1414at 1494.499 kb on + strand, within HP15_1414at 1494.502 kb on - strand, within HP15_1414at 1494.505 kb on + strand, within HP15_1414at 1494.583 kb on - strand, within HP15_1414at 1494.656 kb on + strand, within HP15_1414at 1494.664 kb on - strand, within HP15_1414at 1494.730 kb on - strand, within HP15_1414at 1494.778 kb on + strand, within HP15_1414at 1494.778 kb on + strand, within HP15_1414at 1494.786 kb on - strand, within HP15_1414at 1494.786 kb on - strand, within HP15_1414at 1494.786 kb on - strand, within HP15_1414at 1494.786 kb on - strand, within HP15_1414at 1494.786 kb on - strand, within HP15_1414at 1494.786 kb on - strand, within HP15_1414at 1494.786 kb on - strand, within HP15_1414at 1494.786 kb on - strand, within HP15_1414at 1494.877 kb on + strandat 1494.907 kb on - strandat 1495.058 kb on + strandat 1495.187 kb on + strand, within HP15_1415at 1495.195 kb on - strand, within HP15_1415at 1495.237 kb on - strand, within HP15_1415at 1495.237 kb on - strand, within HP15_1415at 1495.315 kb on - strand, within HP15_1415at 1495.484 kb on - strand, within HP15_1415at 1495.524 kb on - strand, within HP15_1415at 1495.529 kb on - strand, within HP15_1415at 1495.538 kb on + strand, within HP15_1415at 1495.556 kb on - strand, within HP15_1415at 1495.560 kb on + strand, within HP15_1415at 1495.566 kb on - strand, within HP15_1415at 1495.679 kb on - strand, within HP15_1415at 1495.679 kb on - strand, within HP15_1415at 1495.727 kb on - strand, within HP15_1415at 1495.842 kb on - strand, within HP15_1415at 1495.945 kb on + strand, within HP15_1415at 1496.017 kb on - strand, within HP15_1415at 1496.038 kb on - strand, within HP15_1415at 1496.145 kb on - strand, within HP15_1415at 1496.180 kb on - strand, within HP15_1415at 1496.312 kb on - strand, within HP15_1415at 1496.604 kb on - strand, within HP15_1415at 1496.611 kb on - strand, within HP15_1415at 1496.634 kb on + strand, within HP15_1415at 1496.635 kb on - strand, within HP15_1415at 1496.667 kb on + strand, within HP15_1415at 1496.667 kb on + strand, within HP15_1415at 1496.675 kb on - strand, within HP15_1415at 1496.713 kb on + strand, within HP15_1415at 1496.713 kb on + strand, within HP15_1415at 1496.713 kb on + strand, within HP15_1415at 1496.713 kb on + strand, within HP15_1415at 1496.713 kb on + strand, within HP15_1415at 1496.721 kb on - strand, within HP15_1415at 1496.721 kb on - strand, within HP15_1415at 1496.731 kb on - strand, within HP15_1415at 1496.859 kb on + strand, within HP15_1415at 1496.896 kb on - strand, within HP15_1415at 1497.017 kb on + strand, within HP15_1415at 1497.056 kb on - strand, within HP15_1415at 1497.082 kb on - strand, within HP15_1415at 1497.161 kb on + strand, within HP15_1415at 1497.161 kb on - strand, within HP15_1415at 1497.168 kb on + strand, within HP15_1415at 1497.242 kb on - strand, within HP15_1415at 1497.242 kb on - strand, within HP15_1415at 1497.294 kb on + strandat 1497.299 kb on + strandat 1497.304 kb on + strandat 1497.328 kb on + strandat 1497.414 kb on + strandat 1497.419 kb on + strandat 1497.422 kb on - strandat 1497.422 kb on - strandat 1497.427 kb on - strandat 1497.495 kb on - strandat 1497.521 kb on + strandat 1497.541 kb on - strandat 1497.567 kb on + strandat 1497.899 kb on + strandat 1498.029 kb on + strandat 1498.131 kb on + strandat 1498.316 kb on + strand, within HP15_1416at 1498.374 kb on + strand, within HP15_1416at 1498.382 kb on - strand, within HP15_1416at 1498.463 kb on + strand, within HP15_1416

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Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
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1,493,954 - HP15_1414 0.14 -0.3
1,493,973 - HP15_1414 0.15 +0.4
1,494,072 + HP15_1414 0.24 -0.1
1,494,162 - HP15_1414 0.32 -0.1
1,494,331 + HP15_1414 0.48 -1.0
1,494,353 + HP15_1414 0.50 +0.3
1,494,361 - HP15_1414 0.50 +0.3
1,494,489 + HP15_1414 0.62 +0.6
1,494,497 - HP15_1414 0.63 +1.0
1,494,499 + HP15_1414 0.63 -0.8
1,494,502 - HP15_1414 0.63 -1.8
1,494,505 + HP15_1414 0.63 -0.8
1,494,583 - HP15_1414 0.70 +0.6
1,494,656 + HP15_1414 0.77 -0.8
1,494,664 - HP15_1414 0.78 +0.7
1,494,730 - HP15_1414 0.84 -0.7
1,494,778 + HP15_1414 0.88 +0.6
1,494,778 + HP15_1414 0.88 -0.9
1,494,786 - HP15_1414 0.89 -0.3
1,494,786 - HP15_1414 0.89 +0.7
1,494,786 - HP15_1414 0.89 +0.3
1,494,786 - HP15_1414 0.89 +1.0
1,494,786 - HP15_1414 0.89 +0.7
1,494,786 - HP15_1414 0.89 +0.4
1,494,786 - HP15_1414 0.89 -1.4
1,494,786 - HP15_1414 0.89 +0.2
1,494,877 + +0.4
1,494,907 - -0.1
1,495,058 + +0.5
1,495,187 + HP15_1415 0.10 +0.1
1,495,195 - HP15_1415 0.10 +0.0
1,495,237 - HP15_1415 0.12 -4.3
1,495,237 - HP15_1415 0.12 -2.7
1,495,315 - HP15_1415 0.15 -1.2
1,495,484 - HP15_1415 0.21 +0.3
1,495,524 - HP15_1415 0.23 +0.1
1,495,529 - HP15_1415 0.23 +0.2
1,495,538 + HP15_1415 0.23 -3.1
1,495,556 - HP15_1415 0.24 +0.7
1,495,560 + HP15_1415 0.24 -2.6
1,495,566 - HP15_1415 0.25 -2.6
1,495,679 - HP15_1415 0.29 +1.2
1,495,679 - HP15_1415 0.29 +0.1
1,495,727 - HP15_1415 0.31 +0.8
1,495,842 - HP15_1415 0.35 -0.6
1,495,945 + HP15_1415 0.39 -3.4
1,496,017 - HP15_1415 0.42 -0.1
1,496,038 - HP15_1415 0.42 -0.5
1,496,145 - HP15_1415 0.47 -1.8
1,496,180 - HP15_1415 0.48 -4.6
1,496,312 - HP15_1415 0.53 -2.2
1,496,604 - HP15_1415 0.64 -1.9
1,496,611 - HP15_1415 0.64 +0.3
1,496,634 + HP15_1415 0.65 +0.2
1,496,635 - HP15_1415 0.65 -0.2
1,496,667 + HP15_1415 0.66 +0.4
1,496,667 + HP15_1415 0.66 -0.8
1,496,675 - HP15_1415 0.67 -2.5
1,496,713 + HP15_1415 0.68 +0.2
1,496,713 + HP15_1415 0.68 -3.6
1,496,713 + HP15_1415 0.68 +0.8
1,496,713 + HP15_1415 0.68 +0.1
1,496,713 + HP15_1415 0.68 +0.6
1,496,721 - HP15_1415 0.68 +0.0
1,496,721 - HP15_1415 0.68 +0.5
1,496,731 - HP15_1415 0.69 +0.2
1,496,859 + HP15_1415 0.74 -0.6
1,496,896 - HP15_1415 0.75 +0.3
1,497,017 + HP15_1415 0.80 -2.5
1,497,056 - HP15_1415 0.81 -1.1
1,497,082 - HP15_1415 0.82 -0.7
1,497,161 + HP15_1415 0.85 -0.5
1,497,161 - HP15_1415 0.85 -1.3
1,497,168 + HP15_1415 0.85 +0.3
1,497,242 - HP15_1415 0.88 -0.3
1,497,242 - HP15_1415 0.88 -2.8
1,497,294 + +0.2
1,497,299 + +0.0
1,497,304 + +1.6
1,497,328 + +0.2
1,497,414 + -2.6
1,497,419 + -0.1
1,497,422 - +0.8
1,497,422 - -0.1
1,497,427 - -2.0
1,497,495 - -2.8
1,497,521 + -0.2
1,497,541 - -3.6
1,497,567 + +0.1
1,497,899 + -0.1
1,498,029 + -0.5
1,498,131 + -2.1
1,498,316 + HP15_1416 0.11 +0.1
1,498,374 + HP15_1416 0.16 +0.9
1,498,382 - HP15_1416 0.16 -1.1
1,498,463 + HP15_1416 0.23 -0.2

Or see this region's nucleotide sequence