Strain Fitness in Marinobacter adhaerens HP15 around HP15_1213

Experiment: Control growth in Pro99_seawater

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1211 and HP15_1212 are separated by 64 nucleotidesHP15_1212 and HP15_1213 are separated by 331 nucleotidesHP15_1213 and HP15_1214 are separated by 157 nucleotides HP15_1211: HP15_1211 - protease III precursor, at 1,256,734 to 1,259,556 _1211 HP15_1212: HP15_1212 - conserved hypothetical protein, at 1,259,621 to 1,259,920 _1212 HP15_1213: HP15_1213 - short chain dehydrogenase, at 1,260,252 to 1,262,291 _1213 HP15_1214: HP15_1214 - methyl-accepting chemotaxis sensory transducer, at 1,262,449 to 1,264,695 _1214 Position (kb) 1260 1261 1262 1263Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1259.334 kb on + strandat 1259.361 kb on - strandat 1259.381 kb on + strandat 1259.680 kb on + strand, within HP15_1212at 1259.870 kb on + strand, within HP15_1212at 1259.870 kb on + strand, within HP15_1212at 1259.878 kb on - strand, within HP15_1212at 1259.915 kb on + strandat 1260.018 kb on + strandat 1260.284 kb on - strandat 1260.374 kb on + strandat 1260.403 kb on + strandat 1260.413 kb on + strandat 1260.701 kb on + strand, within HP15_1213at 1260.701 kb on + strand, within HP15_1213at 1260.709 kb on - strand, within HP15_1213at 1260.709 kb on - strand, within HP15_1213at 1260.754 kb on + strand, within HP15_1213at 1260.887 kb on + strand, within HP15_1213at 1260.929 kb on + strand, within HP15_1213at 1260.939 kb on + strand, within HP15_1213at 1261.045 kb on + strand, within HP15_1213at 1261.060 kb on + strand, within HP15_1213at 1261.060 kb on + strand, within HP15_1213at 1261.119 kb on + strand, within HP15_1213at 1261.127 kb on - strand, within HP15_1213at 1261.149 kb on + strand, within HP15_1213at 1261.332 kb on - strand, within HP15_1213at 1261.454 kb on - strand, within HP15_1213at 1261.552 kb on - strand, within HP15_1213at 1261.563 kb on + strand, within HP15_1213at 1261.584 kb on + strand, within HP15_1213at 1261.865 kb on - strand, within HP15_1213at 1261.956 kb on + strand, within HP15_1213at 1262.584 kb on - strandat 1262.596 kb on - strandat 1262.606 kb on - strandat 1262.619 kb on - strandat 1262.645 kb on - strandat 1262.860 kb on + strand, within HP15_1214at 1262.946 kb on + strand, within HP15_1214at 1263.199 kb on - strand, within HP15_1214at 1263.201 kb on + strand, within HP15_1214at 1263.201 kb on + strand, within HP15_1214at 1263.204 kb on - strand, within HP15_1214

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Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
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1,259,334 + -3.8
1,259,361 - +0.4
1,259,381 + +0.1
1,259,680 + HP15_1212 0.20 -1.1
1,259,870 + HP15_1212 0.83 +0.9
1,259,870 + HP15_1212 0.83 +0.2
1,259,878 - HP15_1212 0.86 -2.4
1,259,915 + +0.7
1,260,018 + -0.1
1,260,284 - +0.2
1,260,374 + -0.8
1,260,403 + -0.6
1,260,413 + +0.2
1,260,701 + HP15_1213 0.22 -0.8
1,260,701 + HP15_1213 0.22 -1.8
1,260,709 - HP15_1213 0.22 +0.2
1,260,709 - HP15_1213 0.22 -0.5
1,260,754 + HP15_1213 0.25 -1.8
1,260,887 + HP15_1213 0.31 +0.4
1,260,929 + HP15_1213 0.33 -0.0
1,260,939 + HP15_1213 0.34 -2.6
1,261,045 + HP15_1213 0.39 -1.7
1,261,060 + HP15_1213 0.40 -0.3
1,261,060 + HP15_1213 0.40 -0.2
1,261,119 + HP15_1213 0.42 +0.4
1,261,127 - HP15_1213 0.43 -0.8
1,261,149 + HP15_1213 0.44 -3.3
1,261,332 - HP15_1213 0.53 +0.6
1,261,454 - HP15_1213 0.59 -1.0
1,261,552 - HP15_1213 0.64 -2.7
1,261,563 + HP15_1213 0.64 -2.6
1,261,584 + HP15_1213 0.65 -0.1
1,261,865 - HP15_1213 0.79 -2.2
1,261,956 + HP15_1213 0.84 +0.4
1,262,584 - -1.9
1,262,596 - -1.5
1,262,606 - -0.1
1,262,619 - +0.9
1,262,645 - -0.1
1,262,860 + HP15_1214 0.18 -1.7
1,262,946 + HP15_1214 0.22 +0.1
1,263,199 - HP15_1214 0.33 +0.4
1,263,201 + HP15_1214 0.33 +0.1
1,263,201 + HP15_1214 0.33 -0.5
1,263,204 - HP15_1214 0.34 +0.7

Or see this region's nucleotide sequence