Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1211 and HP15_1212 are separated by 64 nucleotides HP15_1212 and HP15_1213 are separated by 331 nucleotides HP15_1213 and HP15_1214 are separated by 157 nucleotides
HP15_1211: HP15_1211 - protease III precursor, at 1,256,734 to 1,259,556
_1211
HP15_1212: HP15_1212 - conserved hypothetical protein, at 1,259,621 to 1,259,920
_1212
HP15_1213: HP15_1213 - short chain dehydrogenase, at 1,260,252 to 1,262,291
_1213
HP15_1214: HP15_1214 - methyl-accepting chemotaxis sensory transducer, at 1,262,449 to 1,264,695
_1214
Position (kb)
1260
1261
1262
1263 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1259.334 kb on + strand at 1259.361 kb on - strand at 1259.381 kb on + strand at 1259.680 kb on + strand, within HP15_1212 at 1259.870 kb on + strand, within HP15_1212 at 1259.870 kb on + strand, within HP15_1212 at 1259.878 kb on - strand, within HP15_1212 at 1259.915 kb on + strand at 1260.018 kb on + strand at 1260.284 kb on - strand at 1260.374 kb on + strand at 1260.403 kb on + strand at 1260.413 kb on + strand at 1260.701 kb on + strand, within HP15_1213 at 1260.701 kb on + strand, within HP15_1213 at 1260.709 kb on - strand, within HP15_1213 at 1260.709 kb on - strand, within HP15_1213 at 1260.754 kb on + strand, within HP15_1213 at 1260.887 kb on + strand, within HP15_1213 at 1260.929 kb on + strand, within HP15_1213 at 1260.939 kb on + strand, within HP15_1213 at 1261.045 kb on + strand, within HP15_1213 at 1261.060 kb on + strand, within HP15_1213 at 1261.060 kb on + strand, within HP15_1213 at 1261.119 kb on + strand, within HP15_1213 at 1261.127 kb on - strand, within HP15_1213 at 1261.149 kb on + strand, within HP15_1213 at 1261.332 kb on - strand, within HP15_1213 at 1261.454 kb on - strand, within HP15_1213 at 1261.552 kb on - strand, within HP15_1213 at 1261.563 kb on + strand, within HP15_1213 at 1261.584 kb on + strand, within HP15_1213 at 1261.865 kb on - strand, within HP15_1213 at 1261.956 kb on + strand, within HP15_1213 at 1262.584 kb on - strand at 1262.596 kb on - strand at 1262.606 kb on - strand at 1262.619 kb on - strand at 1262.645 kb on - strand at 1262.860 kb on + strand, within HP15_1214 at 1262.946 kb on + strand, within HP15_1214 at 1263.199 kb on - strand, within HP15_1214 at 1263.201 kb on + strand, within HP15_1214 at 1263.201 kb on + strand, within HP15_1214 at 1263.204 kb on - strand, within HP15_1214
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 1,259,334 + -3.8 1,259,361 - +0.4 1,259,381 + +0.1 1,259,680 + HP15_1212 0.20 -1.1 1,259,870 + HP15_1212 0.83 +0.9 1,259,870 + HP15_1212 0.83 +0.2 1,259,878 - HP15_1212 0.86 -2.4 1,259,915 + +0.7 1,260,018 + -0.1 1,260,284 - +0.2 1,260,374 + -0.8 1,260,403 + -0.6 1,260,413 + +0.2 1,260,701 + HP15_1213 0.22 -0.8 1,260,701 + HP15_1213 0.22 -1.8 1,260,709 - HP15_1213 0.22 +0.2 1,260,709 - HP15_1213 0.22 -0.5 1,260,754 + HP15_1213 0.25 -1.8 1,260,887 + HP15_1213 0.31 +0.4 1,260,929 + HP15_1213 0.33 -0.0 1,260,939 + HP15_1213 0.34 -2.6 1,261,045 + HP15_1213 0.39 -1.7 1,261,060 + HP15_1213 0.40 -0.3 1,261,060 + HP15_1213 0.40 -0.2 1,261,119 + HP15_1213 0.42 +0.4 1,261,127 - HP15_1213 0.43 -0.8 1,261,149 + HP15_1213 0.44 -3.3 1,261,332 - HP15_1213 0.53 +0.6 1,261,454 - HP15_1213 0.59 -1.0 1,261,552 - HP15_1213 0.64 -2.7 1,261,563 + HP15_1213 0.64 -2.6 1,261,584 + HP15_1213 0.65 -0.1 1,261,865 - HP15_1213 0.79 -2.2 1,261,956 + HP15_1213 0.84 +0.4 1,262,584 - -1.9 1,262,596 - -1.5 1,262,606 - -0.1 1,262,619 - +0.9 1,262,645 - -0.1 1,262,860 + HP15_1214 0.18 -1.7 1,262,946 + HP15_1214 0.22 +0.1 1,263,199 - HP15_1214 0.33 +0.4 1,263,201 + HP15_1214 0.33 +0.1 1,263,201 + HP15_1214 0.33 -0.5 1,263,204 - HP15_1214 0.34 +0.7
Or see this region's nucleotide sequence