Strain Fitness in Marinobacter adhaerens HP15 around HP15_1211

Experiment: Control growth in Pro99_seawater

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1209 and HP15_1210 overlap by 14 nucleotidesHP15_1210 and HP15_1211 are separated by 5 nucleotidesHP15_1211 and HP15_1212 are separated by 64 nucleotidesHP15_1212 and HP15_1213 are separated by 331 nucleotides HP15_1209: HP15_1209 - glycosyltransferase involved in cell wall biogenesis, at 1,255,444 to 1,256,109 _1209 HP15_1210: HP15_1210 - conserved hypothetical protein, at 1,256,096 to 1,256,728 _1210 HP15_1211: HP15_1211 - protease III precursor, at 1,256,734 to 1,259,556 _1211 HP15_1212: HP15_1212 - conserved hypothetical protein, at 1,259,621 to 1,259,920 _1212 HP15_1213: HP15_1213 - short chain dehydrogenase, at 1,260,252 to 1,262,291 _1213 Position (kb) 1256 1257 1258 1259 1260Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1255.946 kb on + strand, within HP15_1209at 1256.146 kb on + strandat 1256.245 kb on + strand, within HP15_1210at 1256.332 kb on + strand, within HP15_1210at 1256.358 kb on + strand, within HP15_1210at 1256.366 kb on - strand, within HP15_1210at 1256.422 kb on - strand, within HP15_1210at 1256.516 kb on + strand, within HP15_1210at 1256.602 kb on - strand, within HP15_1210at 1256.693 kb on + strandat 1256.729 kb on - strandat 1257.133 kb on + strand, within HP15_1211at 1257.380 kb on + strand, within HP15_1211at 1257.441 kb on - strand, within HP15_1211at 1257.511 kb on + strand, within HP15_1211at 1257.545 kb on + strand, within HP15_1211at 1257.553 kb on - strand, within HP15_1211at 1258.083 kb on + strand, within HP15_1211at 1258.240 kb on + strand, within HP15_1211at 1258.326 kb on - strand, within HP15_1211at 1258.366 kb on - strand, within HP15_1211at 1259.334 kb on + strandat 1259.361 kb on - strandat 1259.381 kb on + strandat 1259.680 kb on + strand, within HP15_1212at 1259.870 kb on + strand, within HP15_1212at 1259.870 kb on + strand, within HP15_1212at 1259.878 kb on - strand, within HP15_1212at 1259.915 kb on + strandat 1260.018 kb on + strandat 1260.284 kb on - strandat 1260.374 kb on + strandat 1260.403 kb on + strandat 1260.413 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
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1,255,946 + HP15_1209 0.75 -2.2
1,256,146 + -2.4
1,256,245 + HP15_1210 0.24 +1.4
1,256,332 + HP15_1210 0.37 -0.2
1,256,358 + HP15_1210 0.41 +0.3
1,256,366 - HP15_1210 0.43 +0.5
1,256,422 - HP15_1210 0.52 +1.0
1,256,516 + HP15_1210 0.66 -2.7
1,256,602 - HP15_1210 0.80 +0.4
1,256,693 + -0.7
1,256,729 - -3.1
1,257,133 + HP15_1211 0.14 +0.1
1,257,380 + HP15_1211 0.23 -3.0
1,257,441 - HP15_1211 0.25 -0.6
1,257,511 + HP15_1211 0.28 -0.2
1,257,545 + HP15_1211 0.29 -2.4
1,257,553 - HP15_1211 0.29 -2.2
1,258,083 + HP15_1211 0.48 -1.3
1,258,240 + HP15_1211 0.53 -1.4
1,258,326 - HP15_1211 0.56 +0.6
1,258,366 - HP15_1211 0.58 +0.6
1,259,334 + -3.8
1,259,361 - +0.4
1,259,381 + +0.1
1,259,680 + HP15_1212 0.20 -1.1
1,259,870 + HP15_1212 0.83 +0.9
1,259,870 + HP15_1212 0.83 +0.2
1,259,878 - HP15_1212 0.86 -2.4
1,259,915 + +0.7
1,260,018 + -0.1
1,260,284 - +0.2
1,260,374 + -0.8
1,260,403 + -0.6
1,260,413 + +0.2

Or see this region's nucleotide sequence