Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1209 and HP15_1210 overlap by 14 nucleotides HP15_1210 and HP15_1211 are separated by 5 nucleotides HP15_1211 and HP15_1212 are separated by 64 nucleotides HP15_1212 and HP15_1213 are separated by 331 nucleotides
HP15_1209: HP15_1209 - glycosyltransferase involved in cell wall biogenesis, at 1,255,444 to 1,256,109
_1209
HP15_1210: HP15_1210 - conserved hypothetical protein, at 1,256,096 to 1,256,728
_1210
HP15_1211: HP15_1211 - protease III precursor, at 1,256,734 to 1,259,556
_1211
HP15_1212: HP15_1212 - conserved hypothetical protein, at 1,259,621 to 1,259,920
_1212
HP15_1213: HP15_1213 - short chain dehydrogenase, at 1,260,252 to 1,262,291
_1213
Position (kb)
1256
1257
1258
1259
1260 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1255.946 kb on + strand, within HP15_1209 at 1256.146 kb on + strand at 1256.245 kb on + strand, within HP15_1210 at 1256.332 kb on + strand, within HP15_1210 at 1256.358 kb on + strand, within HP15_1210 at 1256.366 kb on - strand, within HP15_1210 at 1256.422 kb on - strand, within HP15_1210 at 1256.516 kb on + strand, within HP15_1210 at 1256.602 kb on - strand, within HP15_1210 at 1256.693 kb on + strand at 1256.729 kb on - strand at 1257.133 kb on + strand, within HP15_1211 at 1257.380 kb on + strand, within HP15_1211 at 1257.441 kb on - strand, within HP15_1211 at 1257.511 kb on + strand, within HP15_1211 at 1257.545 kb on + strand, within HP15_1211 at 1257.553 kb on - strand, within HP15_1211 at 1258.083 kb on + strand, within HP15_1211 at 1258.240 kb on + strand, within HP15_1211 at 1258.326 kb on - strand, within HP15_1211 at 1258.366 kb on - strand, within HP15_1211 at 1259.334 kb on + strand at 1259.361 kb on - strand at 1259.381 kb on + strand at 1259.680 kb on + strand, within HP15_1212 at 1259.870 kb on + strand, within HP15_1212 at 1259.870 kb on + strand, within HP15_1212 at 1259.878 kb on - strand, within HP15_1212 at 1259.915 kb on + strand at 1260.018 kb on + strand at 1260.284 kb on - strand at 1260.374 kb on + strand at 1260.403 kb on + strand at 1260.413 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 1,255,946 + HP15_1209 0.75 -2.2 1,256,146 + -2.4 1,256,245 + HP15_1210 0.24 +1.4 1,256,332 + HP15_1210 0.37 -0.2 1,256,358 + HP15_1210 0.41 +0.3 1,256,366 - HP15_1210 0.43 +0.5 1,256,422 - HP15_1210 0.52 +1.0 1,256,516 + HP15_1210 0.66 -2.7 1,256,602 - HP15_1210 0.80 +0.4 1,256,693 + -0.7 1,256,729 - -3.1 1,257,133 + HP15_1211 0.14 +0.1 1,257,380 + HP15_1211 0.23 -3.0 1,257,441 - HP15_1211 0.25 -0.6 1,257,511 + HP15_1211 0.28 -0.2 1,257,545 + HP15_1211 0.29 -2.4 1,257,553 - HP15_1211 0.29 -2.2 1,258,083 + HP15_1211 0.48 -1.3 1,258,240 + HP15_1211 0.53 -1.4 1,258,326 - HP15_1211 0.56 +0.6 1,258,366 - HP15_1211 0.58 +0.6 1,259,334 + -3.8 1,259,361 - +0.4 1,259,381 + +0.1 1,259,680 + HP15_1212 0.20 -1.1 1,259,870 + HP15_1212 0.83 +0.9 1,259,870 + HP15_1212 0.83 +0.2 1,259,878 - HP15_1212 0.86 -2.4 1,259,915 + +0.7 1,260,018 + -0.1 1,260,284 - +0.2 1,260,374 + -0.8 1,260,403 + -0.6 1,260,413 + +0.2
Or see this region's nucleotide sequence