Strain Fitness in Marinobacter adhaerens HP15 around HP15_1121

Experiment: Control growth in Pro99_seawater

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1119 and HP15_1120 overlap by 29 nucleotidesHP15_1120 and HP15_1121 are separated by 169 nucleotidesHP15_1121 and HP15_1122 overlap by 4 nucleotidesHP15_1122 and HP15_1123 are separated by 293 nucleotides HP15_1119: HP15_1119 - efflux transporter, RND family, MFP subunit, at 1,147,643 to 1,148,761 _1119 HP15_1120: HP15_1120 - alpha/beta hydrolase fold protein, at 1,148,733 to 1,149,440 _1120 HP15_1121: HP15_1121 - thioesterase superfamily protein, at 1,149,610 to 1,150,116 _1121 HP15_1122: HP15_1122 - conserved hypothetical protein, thioesterase superfamily, at 1,150,113 to 1,150,562 _1122 HP15_1123: HP15_1123 - transcriptional regulator, TetR family, at 1,150,856 to 1,151,470 _1123 Position (kb) 1149 1150 1151Strain fitness (log2 ratio) -3 -2 -1 0 1at 1148.842 kb on + strand, within HP15_1120at 1148.947 kb on + strand, within HP15_1120at 1148.969 kb on + strand, within HP15_1120at 1148.969 kb on + strand, within HP15_1120at 1148.977 kb on - strand, within HP15_1120at 1149.073 kb on - strand, within HP15_1120at 1149.105 kb on - strand, within HP15_1120at 1149.315 kb on - strand, within HP15_1120at 1149.333 kb on - strand, within HP15_1120at 1149.338 kb on + strand, within HP15_1120at 1149.346 kb on - strand, within HP15_1120at 1149.346 kb on - strand, within HP15_1120at 1149.346 kb on - strand, within HP15_1120at 1149.531 kb on - strandat 1149.536 kb on - strandat 1149.621 kb on - strandat 1149.698 kb on + strand, within HP15_1121at 1149.818 kb on + strand, within HP15_1121at 1149.948 kb on + strand, within HP15_1121at 1149.956 kb on - strand, within HP15_1121at 1149.966 kb on - strand, within HP15_1121at 1149.996 kb on - strand, within HP15_1121at 1150.002 kb on + strand, within HP15_1121at 1150.095 kb on - strandat 1150.122 kb on - strandat 1150.212 kb on - strand, within HP15_1122at 1150.214 kb on + strand, within HP15_1122at 1150.404 kb on + strand, within HP15_1122at 1150.454 kb on + strand, within HP15_1122at 1150.466 kb on + strand, within HP15_1122at 1150.484 kb on - strand, within HP15_1122at 1150.522 kb on - strandat 1150.582 kb on + strandat 1150.587 kb on - strandat 1150.878 kb on - strandat 1150.907 kb on + strandat 1150.920 kb on - strand, within HP15_1123at 1151.073 kb on + strand, within HP15_1123at 1151.097 kb on - strand, within HP15_1123

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
remove
1,148,842 + HP15_1120 0.15 +0.6
1,148,947 + HP15_1120 0.30 -2.1
1,148,969 + HP15_1120 0.33 +0.9
1,148,969 + HP15_1120 0.33 +0.0
1,148,977 - HP15_1120 0.34 +0.4
1,149,073 - HP15_1120 0.48 -1.6
1,149,105 - HP15_1120 0.53 +0.7
1,149,315 - HP15_1120 0.82 -2.4
1,149,333 - HP15_1120 0.85 -0.3
1,149,338 + HP15_1120 0.85 -1.5
1,149,346 - HP15_1120 0.87 -2.4
1,149,346 - HP15_1120 0.87 -0.1
1,149,346 - HP15_1120 0.87 +0.0
1,149,531 - +0.1
1,149,536 - +0.2
1,149,621 - -2.9
1,149,698 + HP15_1121 0.17 -3.2
1,149,818 + HP15_1121 0.41 -3.5
1,149,948 + HP15_1121 0.67 +0.3
1,149,956 - HP15_1121 0.68 +0.3
1,149,966 - HP15_1121 0.70 -2.7
1,149,996 - HP15_1121 0.76 +0.1
1,150,002 + HP15_1121 0.77 -0.2
1,150,095 - -0.4
1,150,122 - +0.7
1,150,212 - HP15_1122 0.22 +0.7
1,150,214 + HP15_1122 0.22 -0.8
1,150,404 + HP15_1122 0.65 +0.2
1,150,454 + HP15_1122 0.76 +0.6
1,150,466 + HP15_1122 0.78 +0.7
1,150,484 - HP15_1122 0.82 -1.5
1,150,522 - +0.8
1,150,582 + -1.2
1,150,587 - -0.1
1,150,878 - -0.3
1,150,907 + -3.7
1,150,920 - HP15_1123 0.10 -1.7
1,151,073 + HP15_1123 0.35 -2.5
1,151,097 - HP15_1123 0.39 -0.1

Or see this region's nucleotide sequence