Experiment: RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 0.25x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08320 and BWI76_RS08325 overlap by 1 nucleotides BWI76_RS08325 and BWI76_RS08330 are separated by 309 nucleotides BWI76_RS08330 and BWI76_RS08335 are separated by 202 nucleotides BWI76_RS08335 and BWI76_RS08340 overlap by 32 nucleotides
BWI76_RS08320: BWI76_RS08320 - potassium-transporting ATPase subunit KdpA, at 1,761,664 to 1,763,343
_RS08320
BWI76_RS08325: BWI76_RS08325 - potassium-transporting ATPase subunit F, at 1,763,343 to 1,763,432
_RS08325
BWI76_RS08330: BWI76_RS08330 - hypothetical protein, at 1,763,742 to 1,763,948
_RS08330
BWI76_RS08335: BWI76_RS08335 - deoxyribodipyrimidine photo-lyase, at 1,764,151 to 1,765,593
_RS08335
BWI76_RS08340: BWI76_RS08340 - MFS transporter, at 1,765,562 to 1,767,043
_RS08340
Position (kb) 1764
1765
1766 Strain fitness (log2 ratio) -1
0
1 at 1763.466 kb on + strand at 1763.674 kb on + strand at 1763.674 kb on + strand at 1763.903 kb on + strand, within BWI76_RS08330 at 1763.968 kb on + strand at 1763.984 kb on - strand at 1764.068 kb on - strand at 1764.085 kb on + strand at 1764.091 kb on + strand at 1764.093 kb on - strand at 1764.244 kb on - strand at 1764.305 kb on - strand, within BWI76_RS08335 at 1764.786 kb on - strand, within BWI76_RS08335 at 1765.149 kb on + strand, within BWI76_RS08335 at 1765.192 kb on + strand, within BWI76_RS08335 at 1765.595 kb on - strand at 1765.640 kb on + strand at 1765.672 kb on + strand at 1765.870 kb on + strand, within BWI76_RS08340 at 1765.895 kb on + strand, within BWI76_RS08340 at 1765.920 kb on - strand, within BWI76_RS08340 at 1765.996 kb on + strand, within BWI76_RS08340 at 1766.052 kb on + strand, within BWI76_RS08340 at 1766.129 kb on - strand, within BWI76_RS08340 at 1766.247 kb on + strand, within BWI76_RS08340 at 1766.278 kb on + strand, within BWI76_RS08340 at 1766.296 kb on - strand, within BWI76_RS08340 at 1766.369 kb on - strand, within BWI76_RS08340 at 1766.535 kb on - strand, within BWI76_RS08340 at 1766.554 kb on - strand, within BWI76_RS08340
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 0.25x remove 1,763,466 + +0.2 1,763,674 + +0.1 1,763,674 + +0.3 1,763,903 + BWI76_RS08330 0.78 +0.1 1,763,968 + +0.1 1,763,984 - +0.1 1,764,068 - +0.1 1,764,085 + -0.3 1,764,091 + -0.4 1,764,093 - -0.4 1,764,244 - -0.0 1,764,305 - BWI76_RS08335 0.11 +0.7 1,764,786 - BWI76_RS08335 0.44 -0.6 1,765,149 + BWI76_RS08335 0.69 +0.3 1,765,192 + BWI76_RS08335 0.72 +1.5 1,765,595 - +0.0 1,765,640 + -0.2 1,765,672 + -0.5 1,765,870 + BWI76_RS08340 0.21 -0.3 1,765,895 + BWI76_RS08340 0.22 -0.9 1,765,920 - BWI76_RS08340 0.24 +1.5 1,765,996 + BWI76_RS08340 0.29 +0.6 1,766,052 + BWI76_RS08340 0.33 +0.6 1,766,129 - BWI76_RS08340 0.38 -0.4 1,766,247 + BWI76_RS08340 0.46 +0.1 1,766,278 + BWI76_RS08340 0.48 -0.2 1,766,296 - BWI76_RS08340 0.50 +0.4 1,766,369 - BWI76_RS08340 0.54 +0.3 1,766,535 - BWI76_RS08340 0.66 +0.8 1,766,554 - BWI76_RS08340 0.67 +0.2
Or see this region's nucleotide sequence