Experiment: RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 0.25x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS00870 and BWI76_RS00875 are separated by 196 nucleotides BWI76_RS00875 and BWI76_RS00880 are separated by 15 nucleotides BWI76_RS00880 and BWI76_RS00885 are separated by 46 nucleotides
BWI76_RS00870: BWI76_RS00870 - NAD(P)(+) transhydrogenase, at 179,330 to 180,730
_RS00870
BWI76_RS00875: BWI76_RS00875 - DNA-binding transcriptional regulator FabR, at 180,927 to 181,562
_RS00875
BWI76_RS00880: BWI76_RS00880 - membrane protein, at 181,578 to 181,937
_RS00880
BWI76_RS00885: BWI76_RS00885 - tRNA (uridine(54)-C5)-methyltransferase TrmA, at 181,984 to 183,084
_RS00885
Position (kb) 181
182 Strain fitness (log2 ratio) -2
-1
0
1 at 180.794 kb on - strand at 180.883 kb on - strand at 180.885 kb on + strand at 180.915 kb on + strand at 180.923 kb on - strand at 181.021 kb on + strand, within BWI76_RS00875 at 181.021 kb on + strand, within BWI76_RS00875 at 181.021 kb on + strand, within BWI76_RS00875 at 181.109 kb on + strand, within BWI76_RS00875 at 181.129 kb on + strand, within BWI76_RS00875 at 181.294 kb on + strand, within BWI76_RS00875 at 181.383 kb on + strand, within BWI76_RS00875 at 181.388 kb on + strand, within BWI76_RS00875 at 181.396 kb on - strand, within BWI76_RS00875 at 181.444 kb on + strand, within BWI76_RS00875 at 181.586 kb on - strand at 181.590 kb on + strand at 181.590 kb on + strand at 181.590 kb on + strand at 181.590 kb on + strand at 181.590 kb on + strand at 181.595 kb on + strand at 181.595 kb on + strand at 181.598 kb on - strand at 181.603 kb on - strand at 181.659 kb on + strand, within BWI76_RS00880 at 181.661 kb on + strand, within BWI76_RS00880 at 181.661 kb on + strand, within BWI76_RS00880 at 181.886 kb on + strand, within BWI76_RS00880 at 182.436 kb on + strand, within BWI76_RS00885 at 182.439 kb on - strand, within BWI76_RS00885 at 182.575 kb on - strand, within BWI76_RS00885 at 182.637 kb on + strand, within BWI76_RS00885 at 182.713 kb on + strand, within BWI76_RS00885 at 182.772 kb on + strand, within BWI76_RS00885 at 182.812 kb on - strand, within BWI76_RS00885
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 0.25x remove 180,794 - +0.4 180,883 - +1.1 180,885 + +0.3 180,915 + -1.8 180,923 - +0.1 181,021 + BWI76_RS00875 0.15 +0.2 181,021 + BWI76_RS00875 0.15 +0.4 181,021 + BWI76_RS00875 0.15 -1.8 181,109 + BWI76_RS00875 0.29 +0.8 181,129 + BWI76_RS00875 0.32 -0.2 181,294 + BWI76_RS00875 0.58 -0.6 181,383 + BWI76_RS00875 0.72 -0.3 181,388 + BWI76_RS00875 0.72 +1.0 181,396 - BWI76_RS00875 0.74 -0.2 181,444 + BWI76_RS00875 0.81 +0.1 181,586 - -0.8 181,590 + +0.2 181,590 + +1.1 181,590 + -0.5 181,590 + +0.5 181,590 + -1.6 181,595 + -0.7 181,595 + +0.4 181,598 - -1.8 181,603 - +0.4 181,659 + BWI76_RS00880 0.23 +0.2 181,661 + BWI76_RS00880 0.23 +1.2 181,661 + BWI76_RS00880 0.23 -0.2 181,886 + BWI76_RS00880 0.86 +0.6 182,436 + BWI76_RS00885 0.41 -0.5 182,439 - BWI76_RS00885 0.41 -0.3 182,575 - BWI76_RS00885 0.54 +0.6 182,637 + BWI76_RS00885 0.59 +0.3 182,713 + BWI76_RS00885 0.66 +0.2 182,772 + BWI76_RS00885 0.72 +0.4 182,812 - BWI76_RS00885 0.75 +1.5
Or see this region's nucleotide sequence