Experiment: Varel_Bryant_medium_Glucose with Dimethyl Sulfoxide 0.2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0447 and BT0448 are separated by 11 nucleotides BT0448 and BT0449 are separated by 135 nucleotides
BT0447: BT0447 - S-layer related protein precursor, sialic acid-specific 9-O-acetylesterase (NCBI ptt file), at 543,201 to 545,855
BT0447
BT0448: BT0448 - conserved hypothetical protein (NCBI ptt file), at 545,867 to 547,300
BT0448
BT0449: BT0449 - conserved hypothetical protein, putative S-layer related protein precursor (NCBI ptt file), at 547,436 to 548,797
BT0449
Position (kb) 545
546
547
548 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 545.035 kb on + strand, within BT0447 at 545.043 kb on - strand, within BT0447 at 545.079 kb on - strand, within BT0447 at 545.135 kb on + strand, within BT0447 at 545.162 kb on + strand, within BT0447 at 545.206 kb on - strand, within BT0447 at 545.259 kb on + strand, within BT0447 at 545.260 kb on - strand, within BT0447 at 545.416 kb on + strand, within BT0447 at 545.417 kb on - strand, within BT0447 at 545.456 kb on - strand, within BT0447 at 545.470 kb on + strand, within BT0447 at 545.594 kb on + strand at 545.595 kb on - strand at 545.595 kb on - strand at 545.695 kb on + strand at 545.696 kb on - strand at 545.697 kb on + strand at 545.824 kb on - strand at 545.824 kb on - strand at 545.894 kb on + strand at 545.997 kb on + strand at 546.125 kb on + strand, within BT0448 at 546.278 kb on + strand, within BT0448 at 546.326 kb on - strand, within BT0448 at 546.415 kb on + strand, within BT0448 at 546.531 kb on + strand, within BT0448 at 546.576 kb on + strand, within BT0448 at 546.623 kb on + strand, within BT0448 at 546.796 kb on - strand, within BT0448 at 547.002 kb on + strand, within BT0448 at 547.178 kb on + strand at 547.345 kb on + strand at 547.371 kb on + strand at 547.377 kb on + strand at 547.383 kb on + strand at 547.497 kb on + strand at 547.497 kb on + strand at 547.737 kb on - strand, within BT0449 at 547.777 kb on + strand, within BT0449 at 547.780 kb on - strand, within BT0449 at 547.798 kb on + strand, within BT0449 at 547.877 kb on + strand, within BT0449 at 548.164 kb on - strand, within BT0449 at 548.183 kb on + strand, within BT0449 at 548.272 kb on + strand, within BT0449
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Dimethyl Sulfoxide 0.2 vol% remove 545,035 + BT0447 0.69 -1.7 545,043 - BT0447 0.69 +0.6 545,079 - BT0447 0.71 -0.5 545,135 + BT0447 0.73 -0.6 545,162 + BT0447 0.74 +0.0 545,206 - BT0447 0.76 +1.6 545,259 + BT0447 0.78 -2.9 545,260 - BT0447 0.78 -2.3 545,416 + BT0447 0.83 +1.4 545,417 - BT0447 0.83 -1.5 545,456 - BT0447 0.85 +0.8 545,470 + BT0447 0.85 -0.5 545,594 + -1.2 545,595 - +0.9 545,595 - -2.0 545,695 + -0.3 545,696 - +1.9 545,697 + -2.0 545,824 - +0.0 545,824 - +1.0 545,894 + +0.0 545,997 + +0.0 546,125 + BT0448 0.18 -2.0 546,278 + BT0448 0.29 -2.0 546,326 - BT0448 0.32 -2.2 546,415 + BT0448 0.38 -0.5 546,531 + BT0448 0.46 -1.0 546,576 + BT0448 0.49 -1.3 546,623 + BT0448 0.53 -1.0 546,796 - BT0448 0.65 -1.5 547,002 + BT0448 0.79 -0.5 547,178 + -1.8 547,345 + -0.4 547,371 + -1.0 547,377 + +0.0 547,383 + -0.5 547,497 + -0.5 547,497 + +1.3 547,737 - BT0449 0.22 +1.0 547,777 + BT0449 0.25 -0.4 547,780 - BT0449 0.25 -0.8 547,798 + BT0449 0.27 -0.5 547,877 + BT0449 0.32 -2.3 548,164 - BT0449 0.53 -0.2 548,183 + BT0449 0.55 -1.0 548,272 + BT0449 0.61 -0.5
Or see this region's nucleotide sequence