Strain Fitness in Shewanella oneidensis MR-1 around SO4105

Experiment: LB lactate, anaerobic, 1G configuration

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB lactate, anaerobic, 1G configuration
4,262,795	+	mshD	SO4103	0.38	-0.4
4,262,803	-	mshD	SO4103	0.40	-1.5
4,262,803	-	mshD	SO4103	0.40	-1.1
4,262,845	-	mshD	SO4103	0.47	-2.4
4,263,026	-	mshD	SO4103	0.79	-1.5
4,263,087	+	mshD	SO4103	0.90	-1.3
4,263,087	+	mshD	SO4103	0.90	-0.2
4,263,140	-				-1.1
4,263,140	-				-1.3
4,263,155	-				-2.1
4,263,156	-				-0.7
4,263,168	-				-1.1
4,263,293	-	mshC	SO4104	0.33	-0.8
4,263,317	-	mshC	SO4104	0.38	-1.1
4,263,346	+	mshC	SO4104	0.45	-2.1
4,263,346	-	mshC	SO4104	0.45	-1.1
4,263,394	+	mshC	SO4104	0.55	-2.3
4,263,394	-	mshC	SO4104	0.55	-1.2
4,263,402	-	mshC	SO4104	0.56	-2.0
4,263,496	-	mshC	SO4104	0.76	-1.4
4,263,497	-	mshC	SO4104	0.76	-0.1
4,263,512	+	mshC	SO4104	0.80	-1.2
4,263,520	-	mshC	SO4104	0.81	-0.3
4,263,535	-	mshC	SO4104	0.84	-0.9
4,263,557	+	mshC	SO4104	0.89	-1.4
4,263,557	+	mshC	SO4104	0.89	-0.6
4,263,557	+	mshC	SO4104	0.89	+0.6
4,263,557	+	mshC	SO4104	0.89	-2.3
4,263,557	+	mshC	SO4104	0.89	-1.9
4,263,557	+	mshC	SO4104	0.89	-1.3
4,263,557	+	mshC	SO4104	0.89	-1.1
4,263,557	+	mshC	SO4104	0.89	-1.3
4,263,557	+	mshC	SO4104	0.89	-2.6
4,263,557	+	mshC	SO4104	0.89	-0.2
4,263,557	+	mshC	SO4104	0.89	-1.1
4,263,557	+	mshC	SO4104	0.89	-1.4
4,263,557	+	mshC	SO4104	0.89	-1.0
4,263,557	+	mshC	SO4104	0.89	-2.1
4,263,565	-				-1.9
4,263,565	-				-1.0
4,263,565	-				-0.9
4,263,565	-				-3.0
4,263,565	-				-1.1
4,263,565	-				-1.7
4,263,565	-				-0.7
4,263,565	-				-1.8
4,263,584	+				-1.6
4,263,585	+				-1.8
4,263,593	-				-1.4
4,263,643	-				-0.7
4,263,643	-				-0.9
4,263,650	-				+1.5
4,263,655	-				-1.3
4,263,762	+				+0.3
4,263,809	+				-1.1
4,263,828	+				-1.4
4,263,831	+				-1.1
4,263,831	+				-1.4
4,263,839	-				-0.2
4,263,841	+				-0.9
4,263,849	-	mshA	SO4105	0.11	-0.4
4,263,929	+	mshA	SO4105	0.26	-1.5
4,263,935	+	mshA	SO4105	0.28	-0.7
4,263,937	-	mshA	SO4105	0.28	-1.2
4,263,977	+	mshA	SO4105	0.36	-1.8
4,263,985	-	mshA	SO4105	0.37	-0.8
4,264,052	-	mshA	SO4105	0.50	-2.0
4,264,053	-	mshA	SO4105	0.50	-0.1
4,264,070	+	mshA	SO4105	0.54	-2.5
4,264,070	+	mshA	SO4105	0.54	-0.9
4,264,093	+	mshA	SO4105	0.58	-3.0
4,264,170	+	mshA	SO4105	0.73	-0.6
4,264,171	+	mshA	SO4105	0.73	-1.3
4,264,171	+	mshA	SO4105	0.73	-2.3
4,264,171	+	mshA	SO4105	0.73	-0.8
4,264,171	+	mshA	SO4105	0.73	-0.1
4,264,171	+	mshA	SO4105	0.73	+0.5
4,264,178	-	mshA	SO4105	0.75	-1.2
4,264,179	-	mshA	SO4105	0.75	-1.7
4,264,180	+	mshA	SO4105	0.75	-2.0
4,264,180	+	mshA	SO4105	0.75	-0.3
4,264,212	-	mshA	SO4105	0.81	-1.6
4,264,247	-	mshA	SO4105	0.88	-2.1
4,264,272	-				+0.0
4,264,284	+				-0.8
4,264,285	+				-0.4
4,264,292	-				-0.5
4,264,293	-				-2.1
4,264,312	+				-0.9
4,264,315	-				-1.5
4,264,416	-				+0.3
4,264,421	+				-2.5
4,264,421	+				-0.8
4,264,421	+				+0.9
4,264,421	+				-0.4
4,264,421	+				+0.2
4,264,429	-				+0.1
4,264,429	-				-1.1
4,264,429	-				-0.3
4,264,429	-				-0.3
4,264,429	-				-0.7
4,264,451	-				-1.0
4,264,458	-	mshB	SO4106	0.10	-0.5
4,264,481	+	mshB	SO4106	0.14	+0.2
4,264,481	+	mshB	SO4106	0.14	-0.1
4,264,481	+	mshB	SO4106	0.14	-0.2
4,264,488	-	mshB	SO4106	0.15	+0.1
4,264,491	+	mshB	SO4106	0.16	-0.1
4,264,496	+	mshB	SO4106	0.17	-0.7
4,264,504	-	mshB	SO4106	0.18	-0.1
4,264,562	+	mshB	SO4106	0.27	-0.8
4,264,562	+	mshB	SO4106	0.27	-0.3
4,264,568	-	mshB	SO4106	0.28	-0.2
4,264,570	-	mshB	SO4106	0.28	-0.5
4,264,597	+	mshB	SO4106	0.33	-0.7
4,264,623	+	mshB	SO4106	0.37	+1.9
4,264,623	+	mshB	SO4106	0.37	-0.3
4,264,623	+	mshB	SO4106	0.37	+0.6
4,264,626	-	mshB	SO4106	0.38	-1.4
4,264,628	+	mshB	SO4106	0.38	-0.4
4,264,631	-	mshB	SO4106	0.38	-1.2
4,264,631	-	mshB	SO4106	0.38	-1.1
4,264,765	-	mshB	SO4106	0.60	-0.0
4,264,825	-	mshB	SO4106	0.70	-0.8
4,264,889	+	mshB	SO4106	0.80	-0.3
4,264,930	-	mshB	SO4106	0.87	+0.3
4,265,170	+		SO4107	0.17	+0.4
4,265,170	+		SO4107	0.17	+1.4
4,265,170	+		SO4107	0.17	+1.0
4,265,178	-		SO4107	0.18	+1.7
4,265,281	+		SO4107	0.39	-0.6