Strain Fitness in Shewanella oneidensis MR-1 around SO3265

Experiment: LB lactate, anaerobic, 1G configuration

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB lactate, anaerobic, 1G configuration
3,400,578	+		SO3264	0.24	-0.1
3,400,588	-		SO3264	0.25	-0.3
3,400,604	-		SO3264	0.26	-1.0
3,400,613	-		SO3264	0.27	-0.6
3,400,732	+		SO3264	0.37	+0.1
3,400,757	-		SO3264	0.39	-0.6
3,400,778	-		SO3264	0.41	-1.3
3,400,807	-		SO3264	0.43	-1.6
3,400,876	-		SO3264	0.49	+0.2
3,400,935	-		SO3264	0.54	-1.7
3,400,938	+		SO3264	0.54	-0.6
3,400,956	+		SO3264	0.56	-0.6
3,401,003	+		SO3264	0.60	+0.1
3,401,066	-		SO3264	0.65	-0.6
3,401,066	-		SO3264	0.65	-0.6
3,401,154	+		SO3264	0.73	-0.0
3,401,154	+		SO3264	0.73	+0.9
3,401,162	-		SO3264	0.73	+0.0
3,401,162	-		SO3264	0.73	+0.2
3,401,162	-		SO3264	0.73	-1.2
3,401,191	+		SO3264	0.76	-0.3
3,401,227	+		SO3264	0.79	+0.2
3,401,237	+		SO3264	0.80	-0.1
3,401,275	+		SO3264	0.83	-0.7
3,401,295	+		SO3264	0.84	+1.4
3,401,295	+		SO3264	0.84	-0.2
3,401,302	-		SO3264	0.85	-0.8
3,401,303	-		SO3264	0.85	-1.6
3,401,303	-		SO3264	0.85	-1.6
3,401,348	+		SO3264	0.89	-0.6
3,401,356	-		SO3264	0.90	-2.2
3,401,426	+				-1.0
3,401,434	-				-1.0
3,401,436	+				+1.0
3,401,436	+				+0.3
3,401,444	-				+1.0
3,401,524	-				-0.1
3,401,593	+				-2.4
3,401,602	-		SO3265	0.10	-2.1
3,401,604	+		SO3265	0.10	-2.4
3,401,723	-		SO3265	0.20	+0.0
3,401,725	-		SO3265	0.20	-0.6
3,401,863	+		SO3265	0.31	-1.3
3,401,876	+		SO3265	0.32	-0.2
3,401,884	-		SO3265	0.33	-1.9
3,401,975	+		SO3265	0.40	-1.3
3,402,023	+		SO3265	0.44	-1.0
3,402,023	+		SO3265	0.44	-1.4
3,402,023	+		SO3265	0.44	-2.0
3,402,031	-		SO3265	0.45	-2.9
3,402,031	-		SO3265	0.45	-2.9
3,402,031	-		SO3265	0.45	-2.6
3,402,096	+		SO3265	0.50	-2.2
3,402,206	+		SO3265	0.59	-1.0
3,402,277	+		SO3265	0.65	-2.7
3,402,290	-		SO3265	0.66	-1.4
3,402,290	-		SO3265	0.66	-2.7
3,402,295	-		SO3265	0.66	-1.8
3,402,373	+		SO3265	0.72	-1.9
3,402,373	+		SO3265	0.72	-2.6
3,402,420	+		SO3265	0.76	-0.6
3,402,470	-		SO3265	0.80	-0.4
3,402,470	-		SO3265	0.80	-1.8
3,402,470	-		SO3265	0.80	-1.8
3,402,478	+		SO3265	0.81	-2.0
3,402,530	-		SO3265	0.85	+0.0
3,402,530	-		SO3265	0.85	-1.6
3,402,583	-		SO3265	0.89	-1.2
3,402,611	-				-2.3
3,402,624	+				-2.0
3,402,632	-				-2.3
3,402,643	+				-3.4
3,402,643	+				-0.6
3,402,650	-				-1.3
3,402,660	+				-1.3
3,402,660	+				-0.2
3,402,661	+				+0.0
3,402,665	+				-2.0
3,402,698	-				-0.4
3,402,722	+				-0.6
3,402,756	+				-0.5
3,402,756	+				+0.3
3,402,764	-				-0.3
3,402,775	-				-0.2
3,402,783	-				-0.4
3,402,790	-				-0.7
3,402,792	+				-0.2
3,402,800	-				-0.2
3,402,800	-				+0.2
3,402,800	-				-0.1
3,402,800	-				-0.4
3,402,805	-				+0.2
3,402,824	+				-0.1
3,402,832	-				+0.0
3,402,832	-				-1.0
3,402,832	-				+0.0
3,402,853	+				-0.1
3,402,853	+				-2.2
3,402,861	-		SO3266	0.10	-0.2
3,402,874	-		SO3266	0.11	-1.3
3,402,874	-		SO3266	0.11	+0.7
3,402,874	-		SO3266	0.11	+0.0
3,402,876	+		SO3266	0.11	-1.8
3,402,884	+		SO3266	0.12	-0.0
3,402,894	+		SO3266	0.13	+0.3
3,402,894	+		SO3266	0.13	-1.3
3,402,911	+		SO3266	0.14	-0.6
3,402,913	-		SO3266	0.15	+0.2
3,402,921	+		SO3266	0.15	+0.1
3,402,921	+		SO3266	0.15	-0.7
3,402,929	-		SO3266	0.16	+0.2
3,402,929	-		SO3266	0.16	-0.1
3,402,929	-		SO3266	0.16	+1.0
3,402,933	+		SO3266	0.16	-0.6
3,402,934	+		SO3266	0.16	+0.3
3,402,941	-		SO3266	0.17	+0.0
3,402,944	+		SO3266	0.17	+0.9
3,402,945	+		SO3266	0.17	-0.8
3,402,945	+		SO3266	0.17	-0.6
3,402,945	+		SO3266	0.17	+0.0
3,402,953	-		SO3266	0.18	-0.4
3,402,955	+		SO3266	0.18	-1.1
3,402,955	+		SO3266	0.18	-0.2
3,402,955	+		SO3266	0.18	-0.2
3,402,956	+		SO3266	0.18	-0.1
3,402,963	-		SO3266	0.19	-0.6
3,402,963	-		SO3266	0.19	-0.6
3,402,963	-		SO3266	0.19	-0.1
3,402,963	-		SO3266	0.19	+0.7
3,402,963	-		SO3266	0.19	+0.1
3,402,964	-				+0.0
3,402,964	-		SO3266	0.19	-1.6
3,402,964	-		SO3266	0.19	+0.1
3,402,964	-		SO3266	0.19	+0.4
3,402,977	-		SO3266	0.20	-0.4
3,402,977	-		SO3266	0.20	-0.5
3,402,992	+		SO3266	0.21	-2.1
3,402,997	+		SO3266	0.22	+0.2
3,402,997	+		SO3266	0.22	+0.9
3,402,997	+		SO3266	0.22	+1.0
3,403,000	-		SO3266	0.22	+0.0
3,403,004	+		SO3266	0.22	+0.5
3,403,004	+		SO3266	0.22	-0.4
3,403,004	+		SO3266	0.22	-0.7
3,403,005	+		SO3266	0.22	-0.6
3,403,005	+		SO3266	0.22	-0.4
3,403,005	-		SO3266	0.22	-0.3
3,403,005	-		SO3266	0.22	-0.6
3,403,005	-		SO3266	0.22	+0.3
3,403,005	-		SO3266	0.22	-0.1
3,403,005	-		SO3266	0.22	+1.0
3,403,012	-		SO3266	0.23	+0.5
3,403,012	-		SO3266	0.23	-0.5
3,403,012	-		SO3266	0.23	+1.3
3,403,012	-		SO3266	0.23	-0.3
3,403,031	+		SO3266	0.24	-0.4
3,403,101	+		SO3266	0.30	+1.0
3,403,101	+		SO3266	0.30	-0.4
3,403,101	+		SO3266	0.30	+2.0
3,403,101	+		SO3266	0.30	-0.3
3,403,101	+		SO3266	0.30	-0.1
3,403,101	+		SO3266	0.30	+0.8
3,403,101	+		SO3266	0.30	-0.1
3,403,101	+		SO3266	0.30	+0.3
3,403,108	+		SO3266	0.31	-0.6
3,403,109	-		SO3266	0.31	+0.0
3,403,109	-		SO3266	0.31	-1.0
3,403,109	-		SO3266	0.31	-0.5
3,403,109	-		SO3266	0.31	+0.8
3,403,109	-				+0.0
3,403,109	-		SO3266	0.31	+1.0
3,403,109	-		SO3266	0.31	+0.9
3,403,109	-		SO3266	0.31	-0.4
3,403,109	-		SO3266	0.31	-0.4
3,403,109	-		SO3266	0.31	+0.6
3,403,109	-		SO3266	0.31	+0.1
3,403,144	+		SO3266	0.34	+0.4
3,403,147	+		SO3266	0.34	+0.8
3,403,163	+		SO3266	0.35	+0.4
3,403,184	-		SO3266	0.37	+0.0
3,403,196	-		SO3266	0.38	+0.9
3,403,217	-		SO3266	0.40	+0.2
3,403,253	+		SO3266	0.43	-0.2
3,403,261	-		SO3266	0.43	+0.8
3,403,265	-		SO3266	0.44	-0.0
3,403,274	-		SO3266	0.45	+0.3
3,403,276	+		SO3266	0.45	+0.7
3,403,276	+		SO3266	0.45	-1.7
3,403,276	+		SO3266	0.45	+0.0
3,403,279	-		SO3266	0.45	+1.4
3,403,279	-		SO3266	0.45	+0.2
3,403,281	+		SO3266	0.45	-0.5
3,403,282	-		SO3266	0.45	+1.0
3,403,284	-		SO3266	0.45	+0.3
3,403,284	-		SO3266	0.45	-0.1
3,403,290	-		SO3266	0.46	-0.6
3,403,290	-		SO3266	0.46	+0.0
3,403,301	+		SO3266	0.47	-1.0
3,403,304	-		SO3266	0.47	+0.5
3,403,304	-		SO3266	0.47	+0.5
3,403,345	-		SO3266	0.50	+0.7
3,403,345	-		SO3266	0.50	-0.2
3,403,369	-		SO3266	0.52	-0.9
3,403,381	-		SO3266	0.53	+0.4
3,403,441	+		SO3266	0.58	-2.3
3,403,449	-		SO3266	0.59	-0.3
3,403,462	+		SO3266	0.60	-1.0
3,403,462	+		SO3266	0.60	+0.3
3,403,462	+		SO3266	0.60	-0.5
3,403,462	+		SO3266	0.60	+0.8
3,403,462	+		SO3266	0.60	-0.4
3,403,462	+		SO3266	0.60	+0.2
3,403,462	+		SO3266	0.60	+1.4
3,403,470	-		SO3266	0.61	+0.4
3,403,470	-		SO3266	0.61	-0.7
3,403,470	-		SO3266	0.61	+1.4
3,403,470	-		SO3266	0.61	-1.3
3,403,470	-		SO3266	0.61	-0.8
3,403,470	-		SO3266	0.61	+1.0
3,403,470	-		SO3266	0.61	+0.3
3,403,470	-		SO3266	0.61	-0.7
3,403,470	-		SO3266	0.61	+0.2
3,403,470	-		SO3266	0.61	+0.1
3,403,470	-		SO3266	0.61	-1.3
3,403,470	-		SO3266	0.61	+0.6
3,403,485	+		SO3266	0.62	+1.8
3,403,485	+		SO3266	0.62	-1.1
3,403,485	+		SO3266	0.62	-0.1
3,403,487	+		SO3266	0.62	-0.1
3,403,487	+		SO3266	0.62	+1.0
3,403,493	-		SO3266	0.63	-0.1
3,403,493	-		SO3266	0.63	-0.8
3,403,493	-		SO3266	0.63	-0.3
3,403,495	-		SO3266	0.63	-0.4
3,403,495	-		SO3266	0.63	+0.4
3,403,529	-		SO3266	0.66	+0.4
3,403,574	+		SO3266	0.69	-0.5
3,403,574	+		SO3266	0.69	+0.5
3,403,574	+		SO3266	0.69	+1.4
3,403,574	+		SO3266	0.69	+0.1
3,403,574	+		SO3266	0.69	+0.3
3,403,574	+		SO3266	0.69	-0.1
3,403,574	+		SO3266	0.69	+0.3
3,403,574	+		SO3266	0.69	+0.1
3,403,582	-		SO3266	0.70	-0.3
3,403,582	-		SO3266	0.70	-0.9
3,403,582	-		SO3266	0.70	-0.3
3,403,582	-		SO3266	0.70	+0.2
3,403,582	-		SO3266	0.70	-0.2
3,403,615	-		SO3266	0.73	+0.5
3,403,642	+		SO3266	0.75	-0.0
3,403,662	+		SO3266	0.77	+0.3
3,403,685	+		SO3266	0.79	-0.3
3,403,703	-		SO3266	0.80	+1.0
3,403,703	-		SO3266	0.80	-1.0