Experiment: LB lactate, anaerobic, 1G configuration
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tRNA-Ser-1 and SO1860 are separated by 601 nucleotides SO1860 and uvrC are separated by 106 nucleotides
SO_t032: tRNA-Ser-1 - tRNA-Ser (RefSeq), at 1,951,113 to 1,951,203
tRNA-Ser-1
SO1860: SO1860 - DNA-binding response regulator, LuxR family (NCBI ptt file), at 1,951,805 to 1,952,449
SO1860
SO1861: uvrC - excinuclease ABC, C subunit (NCBI ptt file), at 1,952,556 to 1,954,385
uvrC
Position (kb)
1951
1952
1953 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1950.836 kb on + strand at 1950.923 kb on - strand at 1950.923 kb on - strand at 1950.925 kb on + strand at 1950.925 kb on + strand at 1950.933 kb on - strand at 1950.933 kb on - strand at 1950.954 kb on - strand at 1950.954 kb on - strand at 1950.962 kb on + strand at 1950.985 kb on - strand at 1950.986 kb on - strand at 1951.079 kb on + strand at 1951.580 kb on + strand at 1951.596 kb on + strand at 1951.719 kb on + strand at 1951.761 kb on - strand at 1951.780 kb on - strand at 1951.780 kb on - strand at 1951.780 kb on - strand at 1951.780 kb on - strand at 1951.780 kb on - strand at 1951.782 kb on + strand at 1951.787 kb on + strand at 1951.787 kb on + strand at 1951.787 kb on + strand at 1951.787 kb on + strand at 1951.787 kb on + strand at 1951.787 kb on + strand at 1951.787 kb on + strand at 1951.795 kb on - strand at 1951.830 kb on + strand at 1951.840 kb on + strand at 1951.840 kb on + strand at 1951.840 kb on + strand at 1951.845 kb on + strand at 1951.845 kb on + strand at 1951.853 kb on - strand at 1951.853 kb on - strand at 1951.853 kb on - strand at 1951.853 kb on - strand at 1951.929 kb on + strand, within SO1860 at 1951.937 kb on - strand, within SO1860 at 1951.942 kb on - strand, within SO1860 at 1952.057 kb on + strand, within SO1860 at 1952.135 kb on - strand, within SO1860 at 1952.168 kb on - strand, within SO1860 at 1952.299 kb on + strand, within SO1860 at 1952.300 kb on - strand, within SO1860 at 1952.320 kb on + strand, within SO1860 at 1952.320 kb on + strand, within SO1860 at 1952.328 kb on - strand, within SO1860 at 1952.347 kb on + strand, within SO1860 at 1952.385 kb on + strand at 1952.391 kb on + strand at 1952.391 kb on + strand at 1952.399 kb on - strand at 1952.489 kb on + strand at 1952.565 kb on + strand at 1952.630 kb on + strand at 1952.767 kb on + strand, within uvrC at 1952.816 kb on + strand, within uvrC at 1952.824 kb on - strand, within uvrC at 1952.898 kb on - strand, within uvrC at 1952.899 kb on + strand, within uvrC at 1952.947 kb on - strand, within uvrC at 1952.953 kb on - strand, within uvrC at 1952.977 kb on - strand, within uvrC at 1953.008 kb on + strand, within uvrC at 1953.323 kb on + strand, within uvrC at 1953.326 kb on - strand, within uvrC at 1953.331 kb on - strand, within uvrC at 1953.354 kb on - strand, within uvrC at 1953.435 kb on + strand, within uvrC at 1953.435 kb on + strand, within uvrC
Per-strain Table
Position Strand Gene LocusTag Fraction LB lactate, anaerobic, 1G configuration remove 1,950,836 + +0.1 1,950,923 - -0.3 1,950,923 - -0.2 1,950,925 + -1.0 1,950,925 + +0.1 1,950,933 - -0.2 1,950,933 - -0.2 1,950,954 - +0.1 1,950,954 - +0.1 1,950,962 + -1.7 1,950,985 - +0.2 1,950,986 - +0.4 1,951,079 + -1.0 1,951,580 + +0.4 1,951,596 + +0.2 1,951,719 + -1.0 1,951,761 - -1.8 1,951,780 - -0.8 1,951,780 - -0.2 1,951,780 - -0.6 1,951,780 - -0.6 1,951,780 - -0.4 1,951,782 + -2.3 1,951,787 + -3.2 1,951,787 + -0.7 1,951,787 + +1.0 1,951,787 + -2.6 1,951,787 + -0.3 1,951,787 + -0.5 1,951,787 + -1.0 1,951,795 - +1.0 1,951,830 + -1.4 1,951,840 + +1.0 1,951,840 + +1.0 1,951,840 + +1.0 1,951,845 + +0.4 1,951,845 + -1.8 1,951,853 - +1.3 1,951,853 - -0.4 1,951,853 - -0.3 1,951,853 - -1.0 1,951,929 + SO1860 0.19 -0.5 1,951,937 - SO1860 0.20 -0.0 1,951,942 - SO1860 0.21 -1.8 1,952,057 + SO1860 0.39 -2.8 1,952,135 - SO1860 0.51 +1.0 1,952,168 - SO1860 0.56 -1.8 1,952,299 + SO1860 0.77 -0.6 1,952,300 - SO1860 0.77 +1.0 1,952,320 + SO1860 0.80 -1.0 1,952,320 + SO1860 0.80 +1.0 1,952,328 - SO1860 0.81 +1.0 1,952,347 + SO1860 0.84 -0.1 1,952,385 + +1.0 1,952,391 + +2.0 1,952,391 + -0.7 1,952,399 - -0.4 1,952,489 + +0.5 1,952,565 + -0.7 1,952,630 + -0.4 1,952,767 + uvrC SO1861 0.12 +2.0 1,952,816 + uvrC SO1861 0.14 +0.7 1,952,824 - uvrC SO1861 0.15 -1.2 1,952,898 - uvrC SO1861 0.19 +1.1 1,952,899 + uvrC SO1861 0.19 -1.4 1,952,947 - uvrC SO1861 0.21 -0.0 1,952,953 - uvrC SO1861 0.22 -0.1 1,952,977 - uvrC SO1861 0.23 +0.8 1,953,008 + uvrC SO1861 0.25 +0.3 1,953,323 + uvrC SO1861 0.42 -0.2 1,953,326 - uvrC SO1861 0.42 -0.0 1,953,331 - uvrC SO1861 0.42 +1.0 1,953,354 - uvrC SO1861 0.44 +0.6 1,953,435 + uvrC SO1861 0.48 +0.2 1,953,435 + uvrC SO1861 0.48 -0.6
Or see this region's nucleotide sequence