Experiment: LB lactate, anaerobic, 1G configuration
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0937 and SO0938 are separated by 66 nucleotides SO0938 and SO0939 are separated by 7 nucleotides SO0939 and SO0940 are separated by 441 nucleotides
SO0937: SO0937 - hypothetical protein (NCBI ptt file), at 968,818 to 969,357
SO0937
SO0938: SO0938 - hypothetical protein (NCBI ptt file), at 969,424 to 969,951
SO0938
SO0939: SO0939 - cytochrome c, putative (NCBI ptt file), at 969,959 to 970,783
SO0939
SO0940: SO0940 - transcriptional regulator-related protein (NCBI ptt file), at 971,225 to 971,968
SO0940
Position (kb) 969
970
971 Strain fitness (log2 ratio) -2
-1
0
1
2 at 969.079 kb on - strand, within SO0937 at 969.079 kb on - strand, within SO0937 at 969.129 kb on + strand, within SO0937 at 969.299 kb on + strand, within SO0937 at 969.299 kb on + strand, within SO0937 at 969.307 kb on - strand at 969.361 kb on + strand at 969.369 kb on - strand at 969.424 kb on + strand at 969.430 kb on - strand at 969.449 kb on - strand at 969.481 kb on - strand, within SO0938 at 969.521 kb on + strand, within SO0938 at 969.529 kb on - strand, within SO0938 at 969.578 kb on + strand, within SO0938 at 969.585 kb on + strand, within SO0938 at 969.585 kb on + strand, within SO0938 at 969.595 kb on + strand, within SO0938 at 969.602 kb on + strand, within SO0938 at 969.603 kb on - strand, within SO0938 at 969.643 kb on + strand, within SO0938 at 969.643 kb on + strand, within SO0938 at 969.797 kb on + strand, within SO0938 at 969.878 kb on + strand, within SO0938 at 969.878 kb on + strand, within SO0938 at 969.921 kb on + strand at 969.929 kb on - strand at 969.940 kb on - strand at 969.987 kb on - strand at 970.122 kb on + strand, within SO0939 at 970.124 kb on + strand, within SO0939 at 970.130 kb on - strand, within SO0939 at 970.209 kb on + strand, within SO0939 at 970.209 kb on - strand, within SO0939 at 970.210 kb on + strand, within SO0939 at 970.218 kb on - strand, within SO0939 at 970.268 kb on + strand, within SO0939 at 970.331 kb on + strand, within SO0939 at 970.429 kb on + strand, within SO0939 at 970.436 kb on - strand, within SO0939 at 970.436 kb on - strand, within SO0939 at 970.483 kb on - strand, within SO0939 at 970.500 kb on - strand, within SO0939 at 970.557 kb on + strand, within SO0939 at 970.580 kb on + strand, within SO0939 at 970.634 kb on - strand, within SO0939 at 970.685 kb on - strand, within SO0939 at 970.687 kb on + strand, within SO0939 at 970.751 kb on + strand at 970.751 kb on + strand at 970.759 kb on - strand at 970.768 kb on + strand at 970.983 kb on - strand at 970.983 kb on - strand at 971.105 kb on + strand at 971.105 kb on + strand at 971.114 kb on - strand at 971.141 kb on + strand at 971.184 kb on - strand at 971.312 kb on + strand, within SO0940 at 971.312 kb on + strand, within SO0940 at 971.320 kb on - strand, within SO0940 at 971.371 kb on + strand, within SO0940 at 971.421 kb on + strand, within SO0940 at 971.543 kb on - strand, within SO0940 at 971.557 kb on + strand, within SO0940 at 971.557 kb on + strand, within SO0940 at 971.576 kb on - strand, within SO0940 at 971.682 kb on + strand, within SO0940 at 971.700 kb on - strand, within SO0940 at 971.728 kb on + strand, within SO0940 at 971.760 kb on + strand, within SO0940 at 971.760 kb on + strand, within SO0940 at 971.768 kb on - strand, within SO0940 at 971.768 kb on - strand, within SO0940 at 971.772 kb on + strand, within SO0940 at 971.772 kb on + strand, within SO0940 at 971.779 kb on - strand, within SO0940 at 971.780 kb on - strand, within SO0940
Per-strain Table
Position Strand Gene LocusTag Fraction LB lactate, anaerobic, 1G configuration remove 969,079 - SO0937 0.48 -0.2 969,079 - SO0937 0.48 -2.1 969,129 + SO0937 0.58 -0.8 969,299 + SO0937 0.89 -0.2 969,299 + SO0937 0.89 -0.6 969,307 - +0.1 969,361 + -0.3 969,369 - +2.5 969,424 + -0.6 969,430 - -0.6 969,449 - -0.2 969,481 - SO0938 0.11 -0.6 969,521 + SO0938 0.18 -0.2 969,529 - SO0938 0.20 -0.1 969,578 + SO0938 0.29 -0.5 969,585 + SO0938 0.30 -0.4 969,585 + SO0938 0.30 +0.3 969,595 + SO0938 0.32 +0.4 969,602 + SO0938 0.34 -0.5 969,603 - SO0938 0.34 -0.2 969,643 + SO0938 0.41 +0.5 969,643 + SO0938 0.41 -0.7 969,797 + SO0938 0.71 -0.1 969,878 + SO0938 0.86 +1.4 969,878 + SO0938 0.86 +0.4 969,921 + -0.0 969,929 - +0.1 969,940 - -0.9 969,987 - -2.6 970,122 + SO0939 0.20 -0.6 970,124 + SO0939 0.20 -0.6 970,130 - SO0939 0.21 -0.9 970,209 + SO0939 0.30 +0.3 970,209 - SO0939 0.30 -0.4 970,210 + SO0939 0.30 -0.5 970,218 - SO0939 0.31 +0.4 970,268 + SO0939 0.37 -1.1 970,331 + SO0939 0.45 -0.3 970,429 + SO0939 0.57 -0.5 970,436 - SO0939 0.58 +0.8 970,436 - SO0939 0.58 -0.4 970,483 - SO0939 0.64 -0.3 970,500 - SO0939 0.66 -0.1 970,557 + SO0939 0.72 -0.2 970,580 + SO0939 0.75 -1.5 970,634 - SO0939 0.82 -0.4 970,685 - SO0939 0.88 -0.1 970,687 + SO0939 0.88 -0.1 970,751 + +0.7 970,751 + +0.3 970,759 - -0.5 970,768 + +0.8 970,983 - +0.9 970,983 - -1.9 971,105 + -0.4 971,105 + +0.5 971,114 - -0.0 971,141 + +0.7 971,184 - -0.1 971,312 + SO0940 0.12 -0.3 971,312 + SO0940 0.12 +0.5 971,320 - SO0940 0.13 +0.0 971,371 + SO0940 0.20 +0.4 971,421 + SO0940 0.26 +0.9 971,543 - SO0940 0.43 +0.3 971,557 + SO0940 0.45 -0.4 971,557 + SO0940 0.45 +1.7 971,576 - SO0940 0.47 -0.5 971,682 + SO0940 0.61 +0.6 971,700 - SO0940 0.64 +0.4 971,728 + SO0940 0.68 +0.5 971,760 + SO0940 0.72 +0.2 971,760 + SO0940 0.72 -0.6 971,768 - SO0940 0.73 +0.8 971,768 - SO0940 0.73 +0.3 971,772 + SO0940 0.74 -0.1 971,772 + SO0940 0.74 -0.1 971,779 - SO0940 0.74 +1.1 971,780 - SO0940 0.75 -0.1
Or see this region's nucleotide sequence