Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS12680

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
2,889,430	+		HSERO_RS12675	0.45	+0.3
2,889,456	+		HSERO_RS12675	0.48	+0.1
2,889,678	+		HSERO_RS12675	0.69	+0.6
2,889,787	-		HSERO_RS12675	0.80	+0.7
2,889,806	+		HSERO_RS12675	0.82	-0.3
2,889,844	-		HSERO_RS12675	0.85	-0.2
2,889,925	-				+0.8
2,889,935	-				+1.3
2,889,935	-				+1.8
2,890,199	+		HSERO_RS12680	0.14	+0.4
2,890,224	+		HSERO_RS12680	0.16	+0.5
2,890,253	-		HSERO_RS12680	0.18	+0.2
2,890,362	-		HSERO_RS12680	0.27	+0.1
2,890,702	-		HSERO_RS12680	0.54	-0.2
2,890,763	-		HSERO_RS12680	0.59	-0.3
2,890,852	-		HSERO_RS12680	0.66	-0.1
2,890,892	-		HSERO_RS12680	0.69	+0.4
2,890,910	-		HSERO_RS12680	0.71	+0.5
2,890,911	+		HSERO_RS12680	0.71	+0.1
2,890,924	-		HSERO_RS12680	0.72	-0.3
2,890,957	+		HSERO_RS12680	0.74	-0.0
2,891,087	+		HSERO_RS12680	0.85	+0.0
2,891,224	+				-0.3
2,891,232	-				-0.6
2,891,497	-		HSERO_RS12685	0.18	+0.1
2,891,575	-		HSERO_RS12685	0.33	+0.4
2,891,764	-		HSERO_RS12685	0.69	+0.0
2,891,918	-				-0.2