Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS09450

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
2,147,719	+		HSERO_RS09445	0.20	+0.2
2,147,762	+		HSERO_RS09445	0.25	-0.1
2,147,811	-		HSERO_RS09445	0.29	+0.7
2,147,853	-		HSERO_RS09445	0.33	+0.9
2,147,880	-		HSERO_RS09445	0.36	+0.1
2,148,128	+		HSERO_RS09445	0.60	+0.4
2,148,255	+		HSERO_RS09445	0.72	-0.1
2,148,302	+		HSERO_RS09445	0.77	+0.9
2,148,366	+		HSERO_RS09445	0.83	+0.2
2,148,414	+		HSERO_RS09445	0.88	+0.3
2,148,440	+				-1.4
2,148,458	-				+0.6
2,148,515	-				+0.5
2,148,623	-				+0.7
2,149,076	-		HSERO_RS09450	0.36	-1.1
2,149,086	-		HSERO_RS09450	0.37	-0.7
2,149,140	-		HSERO_RS09450	0.42	+0.1
2,149,425	+		HSERO_RS09450	0.66	+1.0
2,149,425	+		HSERO_RS09450	0.66	-0.3
2,149,464	+		HSERO_RS09450	0.69	-0.1
2,149,479	+		HSERO_RS09450	0.70	-0.0
2,149,515	+		HSERO_RS09450	0.73	-0.6
2,149,611	-		HSERO_RS09450	0.81	-0.1
2,149,630	+		HSERO_RS09450	0.83	-1.0
2,149,674	+		HSERO_RS09450	0.86	-1.5
2,149,682	-		HSERO_RS09450	0.87	-0.4
2,149,719	-				-0.4
2,149,887	+				-1.5
2,149,887	+				+0.7
2,149,887	+				+0.7
2,149,895	-				-0.3
2,150,485	-		HSERO_RS09455	0.28	-2.0
2,150,498	-		HSERO_RS09455	0.29	-0.4
2,150,635	+		HSERO_RS09455	0.36	-0.3