Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS08915

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
2,017,344	-		HSERO_RS08910	0.34	+0.6
2,017,561	-		HSERO_RS08910	0.53	+0.2
2,017,817	+		HSERO_RS08910	0.75	+0.2
2,017,889	-		HSERO_RS08910	0.82	-1.1
2,017,896	-		HSERO_RS08910	0.82	+0.2
2,018,123	-				+0.5
2,018,290	+				+0.0
2,018,532	-		HSERO_RS08915	0.29	-0.6
2,018,537	-		HSERO_RS08915	0.30	-0.2
2,018,588	-		HSERO_RS08915	0.36	-0.8
2,018,701	-		HSERO_RS08915	0.48	-0.2
2,018,706	-		HSERO_RS08915	0.49	-0.3
2,018,976	-		HSERO_RS08915	0.79	+0.5
2,019,027	-		HSERO_RS08915	0.85	+0.3
2,019,120	+				+1.1
2,019,120	+				+1.0
2,019,120	+				+0.4
2,019,272	+				+0.1
2,019,272	+				-0.2
2,019,403	-		HSERO_RS08920	0.12	-0.0
2,019,777	+		HSERO_RS08920	0.31	-0.3
2,019,801	+		HSERO_RS08920	0.32	-0.3
2,019,823	-		HSERO_RS08920	0.33	-0.9
2,019,902	+		HSERO_RS08920	0.37	-0.2
2,020,014	-		HSERO_RS08920	0.43	-0.2
2,020,069	-		HSERO_RS08920	0.46	-0.3