Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS04685

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
1,019,964	+				-0.5
1,020,005	-				+0.1
1,020,056	+		HSERO_RS04680	0.13	-0.2
1,020,064	-		HSERO_RS04680	0.15	-0.1
1,020,086	+		HSERO_RS04680	0.19	-0.0
1,020,099	+		HSERO_RS04680	0.22	-0.4
1,020,107	-		HSERO_RS04680	0.24	-0.1
1,020,249	+		HSERO_RS04680	0.53	-0.7
1,020,278	-		HSERO_RS04680	0.59	+1.8
1,020,598	-				+0.1
1,020,641	+				-0.7
1,020,697	+				-0.3
1,020,740	+				-0.0
1,020,785	-				-0.1
1,020,799	-				+0.2
1,020,815	-				+0.1
1,020,856	+				+0.3
1,020,956	+				-0.5
1,020,972	+				+0.3
1,021,001	+		HSERO_RS04685	0.12	+2.6
1,021,010	+		HSERO_RS04685	0.13	-0.0
1,021,075	-		HSERO_RS04685	0.21	+0.7
1,021,125	-		HSERO_RS04685	0.27	+0.7
1,021,387	+		HSERO_RS04685	0.56	+0.5
1,021,435	+		HSERO_RS04685	0.62	+0.3
1,021,471	+		HSERO_RS04685	0.66	+0.8
1,021,571	+		HSERO_RS04685	0.77	-0.5
1,021,581	+		HSERO_RS04685	0.78	+0.4
1,021,614	+		HSERO_RS04685	0.82	+0.9
1,021,881	+				+0.3
1,021,998	-				-0.4
1,022,161	-		HSERO_RS04690	0.12	-0.9
1,022,161	-		HSERO_RS04690	0.12	-0.8
1,022,228	-		HSERO_RS04690	0.17	+0.4
1,022,714	+		HSERO_RS04690	0.56	+0.9
1,022,755	+		HSERO_RS04690	0.59	-0.7