Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01530 and HSERO_RS01535 are separated by 417 nucleotides HSERO_RS01535 and HSERO_RS01540 are separated by 105 nucleotides
HSERO_RS01530: HSERO_RS01530 - 3',5'-cyclic-nucleotide phosphodiesterase, at 335,634 to 336,407
_RS01530
HSERO_RS01535: HSERO_RS01535 - phosphohydrolase with GAF sensor, at 336,825 to 338,483
_RS01535
HSERO_RS01540: HSERO_RS01540 - membrane protein, at 338,589 to 340,178
_RS01540
Position (kb) 336
337
338
339 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 335.987 kb on - strand, within HSERO_RS01530 at 335.999 kb on - strand, within HSERO_RS01530 at 336.001 kb on - strand, within HSERO_RS01530 at 336.349 kb on - strand at 336.349 kb on - strand at 336.470 kb on - strand at 336.526 kb on + strand at 336.675 kb on - strand at 336.675 kb on - strand at 336.752 kb on + strand at 336.787 kb on + strand at 336.892 kb on + strand at 336.988 kb on - strand at 337.195 kb on + strand, within HSERO_RS01535 at 337.473 kb on + strand, within HSERO_RS01535 at 337.520 kb on + strand, within HSERO_RS01535 at 337.681 kb on - strand, within HSERO_RS01535 at 337.771 kb on - strand, within HSERO_RS01535 at 338.123 kb on + strand, within HSERO_RS01535 at 338.198 kb on + strand, within HSERO_RS01535 at 338.346 kb on - strand at 338.446 kb on - strand at 338.506 kb on + strand at 338.516 kb on + strand at 338.848 kb on - strand, within HSERO_RS01540 at 338.848 kb on - strand, within HSERO_RS01540 at 338.996 kb on + strand, within HSERO_RS01540 at 339.331 kb on - strand, within HSERO_RS01540 at 339.335 kb on + strand, within HSERO_RS01540 at 339.468 kb on - strand, within HSERO_RS01540
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 335,987 - HSERO_RS01530 0.46 -3.2 335,999 - HSERO_RS01530 0.47 -1.6 336,001 - HSERO_RS01530 0.47 -0.8 336,349 - -2.0 336,349 - +0.2 336,470 - +0.3 336,526 + -0.6 336,675 - +2.1 336,675 - +0.2 336,752 + +0.8 336,787 + +1.1 336,892 + +1.7 336,988 - +0.3 337,195 + HSERO_RS01535 0.22 +0.8 337,473 + HSERO_RS01535 0.39 +1.4 337,520 + HSERO_RS01535 0.42 +0.7 337,681 - HSERO_RS01535 0.52 +0.6 337,771 - HSERO_RS01535 0.57 +1.1 338,123 + HSERO_RS01535 0.78 +1.2 338,198 + HSERO_RS01535 0.83 +0.9 338,346 - +1.4 338,446 - +1.1 338,506 + -0.9 338,516 + +2.3 338,848 - HSERO_RS01540 0.16 -0.3 338,848 - HSERO_RS01540 0.16 -0.6 338,996 + HSERO_RS01540 0.26 -0.8 339,331 - HSERO_RS01540 0.47 +0.1 339,335 + HSERO_RS01540 0.47 +0.8 339,468 - HSERO_RS01540 0.55 +0.5
Or see this region's nucleotide sequence