Strain Fitness in Marinobacter adhaerens HP15 around HP15_6

Experiment: Control growth in Pro99_seawater

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_5 and HP15_6 are separated by 300 nucleotidesHP15_6 and HP15_7 are separated by 599 nucleotides HP15_5: HP15_5 - acetyl-CoA acetyltransferase, at 4,103 to 5,353 _5 HP15_6: HP15_6 - short-chain dehydrogenase/reductase SDR, at 5,654 to 6,310 _6 HP15_7: HP15_7 - secreted protein containing DUF1302, at 6,910 to 8,571 _7 Position (kb) 5 6 7Strain fitness (log2 ratio) -2 -1 0 1 2at 4.659 kb on + strand, within HP15_5at 4.659 kb on + strand, within HP15_5at 4.804 kb on - strand, within HP15_5at 4.881 kb on + strand, within HP15_5at 4.935 kb on - strand, within HP15_5at 5.070 kb on - strand, within HP15_5at 5.117 kb on + strand, within HP15_5at 5.123 kb on + strand, within HP15_5at 5.154 kb on - strand, within HP15_5at 5.181 kb on - strand, within HP15_5at 5.188 kb on - strand, within HP15_5at 5.276 kb on + strandat 5.348 kb on + strandat 5.376 kb on + strandat 5.429 kb on + strandat 5.437 kb on - strandat 5.440 kb on + strandat 5.448 kb on - strandat 5.448 kb on - strandat 5.448 kb on - strandat 5.512 kb on + strandat 5.521 kb on + strandat 5.545 kb on + strandat 5.673 kb on + strandat 5.714 kb on - strandat 5.770 kb on + strand, within HP15_6at 5.770 kb on + strand, within HP15_6at 5.800 kb on - strand, within HP15_6at 5.862 kb on + strand, within HP15_6at 5.933 kb on - strand, within HP15_6at 5.991 kb on + strand, within HP15_6at 5.999 kb on - strand, within HP15_6at 6.023 kb on - strand, within HP15_6at 6.045 kb on + strand, within HP15_6at 6.053 kb on - strand, within HP15_6at 6.053 kb on - strand, within HP15_6at 6.186 kb on - strand, within HP15_6at 6.212 kb on + strand, within HP15_6at 6.214 kb on - strand, within HP15_6at 6.214 kb on - strand, within HP15_6at 6.220 kb on - strand, within HP15_6at 6.220 kb on - strand, within HP15_6at 6.238 kb on + strand, within HP15_6at 6.249 kb on + strandat 6.278 kb on + strandat 6.286 kb on - strandat 6.286 kb on - strandat 6.286 kb on - strandat 6.338 kb on + strandat 6.405 kb on - strandat 6.484 kb on + strandat 6.540 kb on + strandat 6.548 kb on - strandat 6.586 kb on + strandat 6.796 kb on + strandat 6.796 kb on + strandat 6.796 kb on + strandat 6.804 kb on - strandat 6.804 kb on - strandat 6.845 kb on - strandat 6.851 kb on + strandat 6.851 kb on + strandat 6.851 kb on + strandat 6.859 kb on - strandat 6.859 kb on - strandat 6.859 kb on - strandat 6.859 kb on - strandat 6.871 kb on - strandat 6.873 kb on - strandat 6.882 kb on + strandat 6.925 kb on - strandat 6.971 kb on - strandat 7.020 kb on - strandat 7.058 kb on + strandat 7.064 kb on + strandat 7.072 kb on - strandat 7.084 kb on + strand, within HP15_7at 7.084 kb on + strand, within HP15_7at 7.084 kb on + strand, within HP15_7at 7.084 kb on + strand, within HP15_7at 7.089 kb on + strand, within HP15_7at 7.092 kb on - strand, within HP15_7at 7.092 kb on - strand, within HP15_7at 7.099 kb on + strand, within HP15_7at 7.165 kb on + strand, within HP15_7at 7.165 kb on + strand, within HP15_7at 7.173 kb on - strand, within HP15_7at 7.229 kb on - strand, within HP15_7at 7.234 kb on + strand, within HP15_7at 7.239 kb on + strand, within HP15_7at 7.257 kb on + strand, within HP15_7

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Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
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4,659 + HP15_5 0.44 +0.1
4,659 + HP15_5 0.44 -0.2
4,804 - HP15_5 0.56 +0.1
4,881 + HP15_5 0.62 +0.1
4,935 - HP15_5 0.67 -0.1
5,070 - HP15_5 0.77 -1.8
5,117 + HP15_5 0.81 -0.6
5,123 + HP15_5 0.82 -0.4
5,154 - HP15_5 0.84 -0.8
5,181 - HP15_5 0.86 +0.4
5,188 - HP15_5 0.87 -0.5
5,276 + -0.3
5,348 + -0.1
5,376 + -1.6
5,429 + +0.1
5,437 - -0.7
5,440 + -0.5
5,448 - +0.4
5,448 - +0.7
5,448 - +0.9
5,512 + -0.8
5,521 + -0.8
5,545 + -0.3
5,673 + -0.2
5,714 - -0.1
5,770 + HP15_6 0.18 -0.9
5,770 + HP15_6 0.18 -1.4
5,800 - HP15_6 0.22 -2.2
5,862 + HP15_6 0.32 +0.8
5,933 - HP15_6 0.42 -1.4
5,991 + HP15_6 0.51 -0.3
5,999 - HP15_6 0.53 -0.8
6,023 - HP15_6 0.56 -0.7
6,045 + HP15_6 0.60 -0.9
6,053 - HP15_6 0.61 +0.5
6,053 - HP15_6 0.61 -0.5
6,186 - HP15_6 0.81 -0.3
6,212 + HP15_6 0.85 +0.5
6,214 - HP15_6 0.85 -1.0
6,214 - HP15_6 0.85 -1.0
6,220 - HP15_6 0.86 -1.7
6,220 - HP15_6 0.86 +0.8
6,238 + HP15_6 0.89 -0.7
6,249 + -0.9
6,278 + -2.0
6,286 - -0.3
6,286 - -1.1
6,286 - +0.7
6,338 + +0.4
6,405 - -0.4
6,484 + +0.0
6,540 + +0.1
6,548 - -0.7
6,586 + +0.5
6,796 + +0.2
6,796 + +0.2
6,796 + +0.2
6,804 - +0.4
6,804 - +1.2
6,845 - +1.1
6,851 + +1.4
6,851 + +0.3
6,851 + -0.5
6,859 - -0.5
6,859 - +0.0
6,859 - +2.0
6,859 - +0.1
6,871 - +0.6
6,873 - -0.8
6,882 + +0.5
6,925 - +0.8
6,971 - +1.0
7,020 - -1.2
7,058 + -0.9
7,064 + -0.3
7,072 - +0.4
7,084 + HP15_7 0.10 -0.3
7,084 + HP15_7 0.10 +1.0
7,084 + HP15_7 0.10 +0.9
7,084 + HP15_7 0.10 +0.1
7,089 + HP15_7 0.11 -1.3
7,092 - HP15_7 0.11 -1.3
7,092 - HP15_7 0.11 +0.2
7,099 + HP15_7 0.11 +1.2
7,165 + HP15_7 0.15 -0.4
7,165 + HP15_7 0.15 +0.3
7,173 - HP15_7 0.16 +0.3
7,229 - HP15_7 0.19 +1.3
7,234 + HP15_7 0.19 -2.6
7,239 + HP15_7 0.20 +0.0
7,257 + HP15_7 0.21 -0.8

Or see this region's nucleotide sequence