Experiment: Control growth in Pro99_seawater
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3881 and HP15_3882 are separated by 12 nucleotides HP15_3882 and HP15_3883 are separated by 108 nucleotides HP15_3883 and HP15_3884 are separated by 202 nucleotides
HP15_3881: HP15_3881 - response regulator receiver and ANTAR domain protein, at 4,110,769 to 4,112,067
_3881
HP15_3882: HP15_3882 - conserved hypothetical protein, at 4,112,080 to 4,112,778
_3882
HP15_3883: HP15_3883 - Hcp protein, at 4,112,887 to 4,113,417
_3883
HP15_3884: HP15_3884 - protein containing serine/threonine protein kinase-related domain, at 4,113,620 to 4,115,287
_3884
Position (kb)
4112
4113 Strain fitness (log2 ratio)
-1
0
1
2 at 4111.115 kb on + strand, within HP15_3881 at 4111.123 kb on - strand, within HP15_3881 at 4111.186 kb on + strand, within HP15_3881 at 4111.298 kb on + strand, within HP15_3881 at 4111.410 kb on - strand, within HP15_3881 at 4111.460 kb on + strand, within HP15_3881 at 4111.555 kb on - strand, within HP15_3881 at 4111.729 kb on + strand, within HP15_3881 at 4111.737 kb on - strand, within HP15_3881 at 4111.878 kb on + strand, within HP15_3881 at 4111.908 kb on + strand, within HP15_3881 at 4112.088 kb on + strand at 4112.132 kb on + strand at 4112.140 kb on - strand at 4112.140 kb on - strand at 4112.193 kb on - strand, within HP15_3882 at 4112.238 kb on + strand, within HP15_3882 at 4112.273 kb on + strand, within HP15_3882 at 4112.310 kb on - strand, within HP15_3882 at 4112.394 kb on - strand, within HP15_3882 at 4112.415 kb on - strand, within HP15_3882 at 4112.421 kb on + strand, within HP15_3882 at 4112.588 kb on + strand, within HP15_3882 at 4112.608 kb on - strand, within HP15_3882 at 4112.708 kb on - strand, within HP15_3882 at 4112.748 kb on - strand at 4112.780 kb on - strand at 4112.787 kb on + strand at 4112.796 kb on + strand at 4112.880 kb on + strand at 4112.911 kb on + strand at 4112.978 kb on - strand, within HP15_3883 at 4112.986 kb on - strand, within HP15_3883 at 4113.176 kb on + strand, within HP15_3883 at 4113.184 kb on - strand, within HP15_3883 at 4113.191 kb on + strand, within HP15_3883 at 4113.366 kb on + strand at 4113.409 kb on - strand at 4113.629 kb on + strand at 4113.670 kb on + strand at 4113.691 kb on - strand at 4113.744 kb on + strand at 4113.753 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater remove 4,111,115 + HP15_3881 0.27 +2.0 4,111,123 - HP15_3881 0.27 -0.1 4,111,186 + HP15_3881 0.32 -1.7 4,111,298 + HP15_3881 0.41 +0.3 4,111,410 - HP15_3881 0.49 -0.7 4,111,460 + HP15_3881 0.53 -0.5 4,111,555 - HP15_3881 0.61 -0.8 4,111,729 + HP15_3881 0.74 -0.1 4,111,737 - HP15_3881 0.75 +0.4 4,111,878 + HP15_3881 0.85 +0.1 4,111,908 + HP15_3881 0.88 +0.6 4,112,088 + -0.2 4,112,132 + +0.3 4,112,140 - +0.8 4,112,140 - +0.2 4,112,193 - HP15_3882 0.16 -1.0 4,112,238 + HP15_3882 0.23 -0.2 4,112,273 + HP15_3882 0.28 -0.7 4,112,310 - HP15_3882 0.33 -0.5 4,112,394 - HP15_3882 0.45 +0.0 4,112,415 - HP15_3882 0.48 +0.4 4,112,421 + HP15_3882 0.49 -0.7 4,112,588 + HP15_3882 0.73 -0.6 4,112,608 - HP15_3882 0.76 -0.0 4,112,708 - HP15_3882 0.90 -1.3 4,112,748 - -0.0 4,112,780 - +1.3 4,112,787 + +0.4 4,112,796 + +0.4 4,112,880 + -0.2 4,112,911 + +0.9 4,112,978 - HP15_3883 0.17 +2.1 4,112,986 - HP15_3883 0.19 +1.5 4,113,176 + HP15_3883 0.54 -1.0 4,113,184 - HP15_3883 0.56 -0.4 4,113,191 + HP15_3883 0.57 -0.7 4,113,366 + -0.2 4,113,409 - +0.5 4,113,629 + +0.5 4,113,670 + +0.3 4,113,691 - +0.1 4,113,744 + -0.7 4,113,753 + -1.1
Or see this region's nucleotide sequence