Strain Fitness in Marinobacter adhaerens HP15 around HP15_3882

Experiment: Control growth in Pro99_seawater

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3881 and HP15_3882 are separated by 12 nucleotidesHP15_3882 and HP15_3883 are separated by 108 nucleotidesHP15_3883 and HP15_3884 are separated by 202 nucleotides HP15_3881: HP15_3881 - response regulator receiver and ANTAR domain protein, at 4,110,769 to 4,112,067 _3881 HP15_3882: HP15_3882 - conserved hypothetical protein, at 4,112,080 to 4,112,778 _3882 HP15_3883: HP15_3883 - Hcp protein, at 4,112,887 to 4,113,417 _3883 HP15_3884: HP15_3884 - protein containing serine/threonine protein kinase-related domain, at 4,113,620 to 4,115,287 _3884 Position (kb) 4112 4113Strain fitness (log2 ratio) -1 0 1 2at 4111.115 kb on + strand, within HP15_3881at 4111.123 kb on - strand, within HP15_3881at 4111.186 kb on + strand, within HP15_3881at 4111.298 kb on + strand, within HP15_3881at 4111.410 kb on - strand, within HP15_3881at 4111.460 kb on + strand, within HP15_3881at 4111.555 kb on - strand, within HP15_3881at 4111.729 kb on + strand, within HP15_3881at 4111.737 kb on - strand, within HP15_3881at 4111.878 kb on + strand, within HP15_3881at 4111.908 kb on + strand, within HP15_3881at 4112.088 kb on + strandat 4112.132 kb on + strandat 4112.140 kb on - strandat 4112.140 kb on - strandat 4112.193 kb on - strand, within HP15_3882at 4112.238 kb on + strand, within HP15_3882at 4112.273 kb on + strand, within HP15_3882at 4112.310 kb on - strand, within HP15_3882at 4112.394 kb on - strand, within HP15_3882at 4112.415 kb on - strand, within HP15_3882at 4112.421 kb on + strand, within HP15_3882at 4112.588 kb on + strand, within HP15_3882at 4112.608 kb on - strand, within HP15_3882at 4112.708 kb on - strand, within HP15_3882at 4112.748 kb on - strandat 4112.780 kb on - strandat 4112.787 kb on + strandat 4112.796 kb on + strandat 4112.880 kb on + strandat 4112.911 kb on + strandat 4112.978 kb on - strand, within HP15_3883at 4112.986 kb on - strand, within HP15_3883at 4113.176 kb on + strand, within HP15_3883at 4113.184 kb on - strand, within HP15_3883at 4113.191 kb on + strand, within HP15_3883at 4113.366 kb on + strandat 4113.409 kb on - strandat 4113.629 kb on + strandat 4113.670 kb on + strandat 4113.691 kb on - strandat 4113.744 kb on + strandat 4113.753 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control growth in Pro99_seawater
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4,111,115 + HP15_3881 0.27 +2.0
4,111,123 - HP15_3881 0.27 -0.1
4,111,186 + HP15_3881 0.32 -1.7
4,111,298 + HP15_3881 0.41 +0.3
4,111,410 - HP15_3881 0.49 -0.7
4,111,460 + HP15_3881 0.53 -0.5
4,111,555 - HP15_3881 0.61 -0.8
4,111,729 + HP15_3881 0.74 -0.1
4,111,737 - HP15_3881 0.75 +0.4
4,111,878 + HP15_3881 0.85 +0.1
4,111,908 + HP15_3881 0.88 +0.6
4,112,088 + -0.2
4,112,132 + +0.3
4,112,140 - +0.8
4,112,140 - +0.2
4,112,193 - HP15_3882 0.16 -1.0
4,112,238 + HP15_3882 0.23 -0.2
4,112,273 + HP15_3882 0.28 -0.7
4,112,310 - HP15_3882 0.33 -0.5
4,112,394 - HP15_3882 0.45 +0.0
4,112,415 - HP15_3882 0.48 +0.4
4,112,421 + HP15_3882 0.49 -0.7
4,112,588 + HP15_3882 0.73 -0.6
4,112,608 - HP15_3882 0.76 -0.0
4,112,708 - HP15_3882 0.90 -1.3
4,112,748 - -0.0
4,112,780 - +1.3
4,112,787 + +0.4
4,112,796 + +0.4
4,112,880 + -0.2
4,112,911 + +0.9
4,112,978 - HP15_3883 0.17 +2.1
4,112,986 - HP15_3883 0.19 +1.5
4,113,176 + HP15_3883 0.54 -1.0
4,113,184 - HP15_3883 0.56 -0.4
4,113,191 + HP15_3883 0.57 -0.7
4,113,366 + -0.2
4,113,409 - +0.5
4,113,629 + +0.5
4,113,670 + +0.3
4,113,691 - +0.1
4,113,744 + -0.7
4,113,753 + -1.1

Or see this region's nucleotide sequence